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TRMT1 (tRNA methyltransferase 1)

Identity

Alias_namestRNA methyltransferase 1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ20244
TRM1
Other alias
HGNC (Hugo) TRMT1
LocusID (NCBI) 55621
Atlas_Id 75193
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 13104900 and ends at 13116749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT1   25980
Cards
Entrez_Gene (NCBI)TRMT1  55621  tRNA methyltransferase 1
AliasesTRM1
GeneCards (Weizmann)TRMT1
Ensembl hg19 (Hinxton)ENSG00000104907 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104907 [Gene_View]  chr19:13104900-13116749 [Contig_View]  TRMT1 [Vega]
ICGC DataPortalENSG00000104907
TCGA cBioPortalTRMT1
AceView (NCBI)TRMT1
Genatlas (Paris)TRMT1
WikiGenes55621
SOURCE (Princeton)TRMT1
Genetics Home Reference (NIH)TRMT1
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT1  -     chr19:13104900-13116749 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT1  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblTRMT1 - 19p13.13 [CytoView hg19]  TRMT1 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBITRMT1 [Mapview hg19]  TRMT1 [Mapview hg38]
OMIM611669   
Gene and transcription
Genbank (Entrez)AF075055 AF196479 AK000251 AK292377 AK295245
RefSeq transcript (Entrez)NM_001136035 NM_001142554 NM_017722
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT1
Cluster EST : UnigeneHs.515169 [ NCBI ]
CGAP (NCI)Hs.515169
Alternative Splicing GalleryENSG00000104907
Gene ExpressionTRMT1 [ NCBI-GEO ]   TRMT1 [ EBI - ARRAY_EXPRESS ]   TRMT1 [ SEEK ]   TRMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55621
GTEX Portal (Tissue expression)TRMT1
Human Protein AtlasENSG00000104907-TRMT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXH9
Splice isoforms : SwissVarQ9NXH9
Catalytic activity : Enzyme2.1.1.216 [ Enzyme-Expasy ]   2.1.1.2162.1.1.216 [ IntEnz-EBI ]   2.1.1.216 [ BRENDA ]   2.1.1.216 [ KEGG ]   
PhosPhoSitePlusQ9NXH9
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM1 (PS51626)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)SAM-dependent_MTases    Trm1    Znf_CCCH   
Domain families : Pfam (Sanger)TRM (PF02005)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam02005    pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)TRMT1
DMDM Disease mutations55621
Blocks (Seattle)TRMT1
SuperfamilyQ9NXH9
Human Protein Atlas [tissue]ENSG00000104907-TRMT1 [tissue]
Peptide AtlasQ9NXH9
HPRD08617
IPIIPI00020508   IPI00178861   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXH9
IntAct (EBI)Q9NXH9
FunCoupENSG00000104907
BioGRIDTRMT1
STRING (EMBL)TRMT1
ZODIACTRMT1
Ontologies - Pathways
QuickGOQ9NXH9
Ontology : AmiGOtRNA binding  tRNA N2-guanine methylation  RNA binding  tRNA (guanine-N2-)-methyltransferase activity  tRNA (guanine-N2-)-methyltransferase activity  protein binding  nucleus  nucleoplasm  mitochondrion  tRNA modification  metal ion binding  
Ontology : EGO-EBItRNA binding  tRNA N2-guanine methylation  RNA binding  tRNA (guanine-N2-)-methyltransferase activity  tRNA (guanine-N2-)-methyltransferase activity  protein binding  nucleus  nucleoplasm  mitochondrion  tRNA modification  metal ion binding  
NDEx NetworkTRMT1
Atlas of Cancer Signalling NetworkTRMT1
Wikipedia pathwaysTRMT1
Orthology - Evolution
OrthoDB55621
GeneTree (enSembl)ENSG00000104907
Phylogenetic Trees/Animal Genes : TreeFamTRMT1
HOVERGENQ9NXH9
HOGENOMQ9NXH9
Homologs : HomoloGeneTRMT1
Homology/Alignments : Family Browser (UCSC)TRMT1
Gene fusions - Rearrangements
Tumor Fusion PortalTRMT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT1
dbVarTRMT1
ClinVarTRMT1
1000_GenomesTRMT1 
Exome Variant ServerTRMT1
ExAC (Exome Aggregation Consortium)ENSG00000104907
GNOMAD BrowserENSG00000104907
Genetic variants : HAPMAP55621
Genomic Variants (DGV)TRMT1 [DGVbeta]
DECIPHERTRMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT1 
Mutations
ICGC Data PortalTRMT1 
TCGA Data PortalTRMT1 
Broad Tumor PortalTRMT1
OASIS PortalTRMT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT1
DgiDB (Drug Gene Interaction Database)TRMT1
DoCM (Curated mutations)TRMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT1 (select a term)
intoGenTRMT1
Cancer3DTRMT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611669   
Orphanet
DisGeNETTRMT1
MedgenTRMT1
Genetic Testing Registry TRMT1
NextProtQ9NXH9 [Medical]
TSGene55621
GENETestsTRMT1
Target ValidationTRMT1
Huge Navigator TRMT1 [HugePedia]
snp3D : Map Gene to Disease55621
BioCentury BCIQTRMT1
ClinGenTRMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55621
Chemical/Pharm GKB GenePA134867808
Clinical trialTRMT1
Miscellaneous
canSAR (ICR)TRMT1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT1
EVEXTRMT1
GoPubMedTRMT1
iHOPTRMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:14 CET 2017

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