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TRMT10B (tRNA methyltransferase 10B)

Identity

Alias (NCBI)RG9MTD3
bA3J10.9
HGNC (Hugo) TRMT10B
HGNC Alias symbFLJ31455
bA3J10.9
HGNC Previous nameRG9MTD3
HGNC Previous nameRNA (guanine-9-) methyltransferase domain containing 3
 tRNA methyltransferase 10 homolog B (S. cerevisiae)
LocusID (NCBI) 158234
Atlas_Id 75194
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 37753805 and ends at 37778972 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRMT10B (9p13.2) / AR (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRMT10B   26454
Cards
Entrez_Gene (NCBI)TRMT10B    tRNA methyltransferase 10B
AliasesRG9MTD3; bA3J10.9
GeneCards (Weizmann)TRMT10B
Ensembl hg19 (Hinxton)ENSG00000165275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165275 [Gene_View]  ENSG00000165275 [Sequence]  chr9:37753805-37778972 [Contig_View]  TRMT10B [Vega]
ICGC DataPortalENSG00000165275
TCGA cBioPortalTRMT10B
AceView (NCBI)TRMT10B
Genatlas (Paris)TRMT10B
SOURCE (Princeton)TRMT10B
Genetics Home Reference (NIH)TRMT10B
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT10B  -     chr9:37753805-37778972 +  9p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT10B  -     9p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTRMT10B - 9p13.2 [CytoView hg19]  TRMT10B - 9p13.2 [CytoView hg38]
ImmunoBaseENSG00000165275
Genome Data Viewer NCBITRMT10B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056017 AK092718 AK294219 AK295733 AK304516
RefSeq transcript (Entrez)NM_001286950 NM_001286951 NM_001286952 NM_001286953 NM_001286954 NM_144964
Consensus coding sequences : CCDS (NCBI)TRMT10B
Gene ExpressionTRMT10B [ NCBI-GEO ]   TRMT10B [ EBI - ARRAY_EXPRESS ]   TRMT10B [ SEEK ]   TRMT10B [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT10B [ Firebrowse - Broad ]
GenevisibleExpression of TRMT10B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158234
GTEX Portal (Tissue expression)TRMT10B
Human Protein AtlasENSG00000165275-TRMT10B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PF06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PF06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PF06
PhosPhoSitePlusQ6PF06
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM10 (PS51675)   
Domains : Interpro (EBI)MT_TRM10-typ    MT_TRM10-typ_sf    tRNA_m1G_MeTrfase_euk    tRNA_MeTrfase_TRMD/TRM10   
Domain families : Pfam (Sanger)tRNA_m1G_MT (PF01746)   
Domain families : Pfam (NCBI)pfam01746   
Conserved Domain (NCBI)TRMT10B
SuperfamilyQ6PF06
AlphaFold pdb e-kbQ6PF06   
Human Protein Atlas [tissue]ENSG00000165275-TRMT10B [tissue]
HPRD15242
Protein Interaction databases
DIP (DOE-UCLA)Q6PF06
IntAct (EBI)Q6PF06
BioGRIDTRMT10B
STRING (EMBL)TRMT10B
ZODIACTRMT10B
Ontologies - Pathways
QuickGOQ6PF06
Ontology : AmiGOtRNA binding  protein binding  nucleus  nucleoplasm  mitochondrion  cytosol  tRNA (guanine-N1-)-methyltransferase activity  tRNA (guanine-N1-)-methyltransferase activity  tRNA methylation  tRNA (guanine(9)-N(1))-methyltransferase activity  mitochondrial tRNA processing  
Ontology : EGO-EBItRNA binding  protein binding  nucleus  nucleoplasm  mitochondrion  cytosol  tRNA (guanine-N1-)-methyltransferase activity  tRNA (guanine-N1-)-methyltransferase activity  tRNA methylation  tRNA (guanine(9)-N(1))-methyltransferase activity  mitochondrial tRNA processing  
NDEx NetworkTRMT10B
Atlas of Cancer Signalling NetworkTRMT10B
Wikipedia pathwaysTRMT10B
Orthology - Evolution
OrthoDB158234
GeneTree (enSembl)ENSG00000165275
Phylogenetic Trees/Animal Genes : TreeFamTRMT10B
Homologs : HomoloGeneTRMT10B
Homology/Alignments : Family Browser (UCSC)TRMT10B
Gene fusions - Rearrangements
Fusion : QuiverTRMT10B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT10B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT10B
dbVarTRMT10B
ClinVarTRMT10B
MonarchTRMT10B
1000_GenomesTRMT10B 
Exome Variant ServerTRMT10B
GNOMAD BrowserENSG00000165275
Varsome BrowserTRMT10B
ACMGTRMT10B variants
VarityQ6PF06
Genomic Variants (DGV)TRMT10B [DGVbeta]
DECIPHERTRMT10B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT10B 
Mutations
ICGC Data PortalTRMT10B 
TCGA Data PortalTRMT10B 
Broad Tumor PortalTRMT10B
OASIS PortalTRMT10B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT10B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMT10B
Mutations and Diseases : HGMDTRMT10B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRMT10B
DgiDB (Drug Gene Interaction Database)TRMT10B
DoCM (Curated mutations)TRMT10B
CIViC (Clinical Interpretations of Variants in Cancer)TRMT10B
Cancer3DTRMT10B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRMT10B
MedgenTRMT10B
Genetic Testing Registry TRMT10B
NextProtQ6PF06 [Medical]
GENETestsTRMT10B
Target ValidationTRMT10B
Huge Navigator TRMT10B [HugePedia]
ClinGenTRMT10B
Clinical trials, drugs, therapy
MyCancerGenomeTRMT10B
Protein Interactions : CTDTRMT10B
Pharm GKB GenePA134938884
PharosQ6PF06
Clinical trialTRMT10B
Miscellaneous
canSAR (ICR)TRMT10B
HarmonizomeTRMT10B
DataMed IndexTRMT10B
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRMT10B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:02 CEST 2021

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