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TRMT10B (tRNA methyltransferase 10B)

Identity

Alias_namesRG9MTD3
RNA (guanine-9-) methyltransferase domain containing 3
tRNA methyltransferase 10 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ31455
bA3J10.9
Other alias
HGNC (Hugo) TRMT10B
LocusID (NCBI) 158234
Atlas_Id 75194
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 37753803 and ends at 37778972 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRMT10B (9p13.2) / AR (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT10B   26454
Cards
Entrez_Gene (NCBI)TRMT10B  158234  tRNA methyltransferase 10B
AliasesRG9MTD3; bA3J10.9
GeneCards (Weizmann)TRMT10B
Ensembl hg19 (Hinxton)ENSG00000165275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165275 [Gene_View]  chr9:37753803-37778972 [Contig_View]  TRMT10B [Vega]
ICGC DataPortalENSG00000165275
TCGA cBioPortalTRMT10B
AceView (NCBI)TRMT10B
Genatlas (Paris)TRMT10B
WikiGenes158234
SOURCE (Princeton)TRMT10B
Genetics Home Reference (NIH)TRMT10B
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT10B  -     chr9:37753803-37778972 +  9p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT10B  -     9p13.2   [Description]    (hg19-Feb_2009)
EnsemblTRMT10B - 9p13.2 [CytoView hg19]  TRMT10B - 9p13.2 [CytoView hg38]
Mapping of homologs : NCBITRMT10B [Mapview hg19]  TRMT10B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056017 AK092718 AK294219 AK295733 AK304516
RefSeq transcript (Entrez)NM_001286950 NM_001286951 NM_001286952 NM_001286953 NM_001286954 NM_144964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT10B
Cluster EST : UnigeneHs.655614 [ NCBI ]
CGAP (NCI)Hs.655614
Alternative Splicing GalleryENSG00000165275
Gene ExpressionTRMT10B [ NCBI-GEO ]   TRMT10B [ EBI - ARRAY_EXPRESS ]   TRMT10B [ SEEK ]   TRMT10B [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT10B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158234
GTEX Portal (Tissue expression)TRMT10B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PF06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PF06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PF06
Splice isoforms : SwissVarQ6PF06
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ6PF06
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM10 (PS51675)   
Domains : Interpro (EBI)MT_TRM10-typ    tRNA_m1G_MeTrfase_euk    tRNA_MeTrfase_TRMD/TRM10   
Domain families : Pfam (Sanger)tRNA_m1G_MT (PF01746)   
Domain families : Pfam (NCBI)pfam01746   
Conserved Domain (NCBI)TRMT10B
DMDM Disease mutations158234
Blocks (Seattle)TRMT10B
SuperfamilyQ6PF06
Human Protein AtlasENSG00000165275
Peptide AtlasQ6PF06
HPRD15242
IPIIPI00807567   IPI00807576   IPI00921900   IPI00922147   IPI00043369   IPI01015388   IPI01014652   
Protein Interaction databases
DIP (DOE-UCLA)Q6PF06
IntAct (EBI)Q6PF06
FunCoupENSG00000165275
BioGRIDTRMT10B
STRING (EMBL)TRMT10B
ZODIACTRMT10B
Ontologies - Pathways
QuickGOQ6PF06
Ontology : AmiGOcytosol  tRNA (guanine-N1-)-methyltransferase activity  tRNA methylation  
Ontology : EGO-EBIcytosol  tRNA (guanine-N1-)-methyltransferase activity  tRNA methylation  
NDEx NetworkTRMT10B
Atlas of Cancer Signalling NetworkTRMT10B
Wikipedia pathwaysTRMT10B
Orthology - Evolution
OrthoDB158234
GeneTree (enSembl)ENSG00000165275
Phylogenetic Trees/Animal Genes : TreeFamTRMT10B
HOVERGENQ6PF06
HOGENOMQ6PF06
Homologs : HomoloGeneTRMT10B
Homology/Alignments : Family Browser (UCSC)TRMT10B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT10B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT10B
dbVarTRMT10B
ClinVarTRMT10B
1000_GenomesTRMT10B 
Exome Variant ServerTRMT10B
ExAC (Exome Aggregation Consortium)TRMT10B (select the gene name)
Genetic variants : HAPMAP158234
Genomic Variants (DGV)TRMT10B [DGVbeta]
DECIPHERTRMT10B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT10B 
Mutations
ICGC Data PortalTRMT10B 
TCGA Data PortalTRMT10B 
Broad Tumor PortalTRMT10B
OASIS PortalTRMT10B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRMT10B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT10B
DgiDB (Drug Gene Interaction Database)TRMT10B
DoCM (Curated mutations)TRMT10B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT10B (select a term)
intoGenTRMT10B
Cancer3DTRMT10B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRMT10B
Genetic Testing Registry TRMT10B
NextProtQ6PF06 [Medical]
TSGene158234
GENETestsTRMT10B
Target ValidationTRMT10B
Huge Navigator TRMT10B [HugePedia]
snp3D : Map Gene to Disease158234
BioCentury BCIQTRMT10B
ClinGenTRMT10B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158234
Chemical/Pharm GKB GenePA134938884
Clinical trialTRMT10B
Miscellaneous
canSAR (ICR)TRMT10B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT10B
EVEXTRMT10B
GoPubMedTRMT10B
iHOPTRMT10B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:38 CEST 2017

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