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TRMT10C (tRNA methyltransferase 10C, mitochondrial RNase P subunit)

Identity

Alias_namesRG9MTD1
RNA (guanine-9-) methyltransferase domain containing 1
tRNA methyltransferase 10 homolog C (S. cerevisiae)
Alias_symbol (synonym)FLJ20432
MRPP1
Other aliasCOXPD30
HNYA
HGNC (Hugo) TRMT10C
LocusID (NCBI) 54931
Atlas_Id 75195
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101561836 and ends at 101566446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPHA6 (3q11.2) / TRMT10C (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT10C   26022
Cards
Entrez_Gene (NCBI)TRMT10C  54931  tRNA methyltransferase 10C, mitochondrial RNase P subunit
AliasesCOXPD30; HNYA; MRPP1; RG9MTD1
GeneCards (Weizmann)TRMT10C
Ensembl hg19 (Hinxton)ENSG00000174173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174173 [Gene_View]  chr3:101561836-101566446 [Contig_View]  TRMT10C [Vega]
ICGC DataPortalENSG00000174173
TCGA cBioPortalTRMT10C
AceView (NCBI)TRMT10C
Genatlas (Paris)TRMT10C
WikiGenes54931
SOURCE (Princeton)TRMT10C
Genetics Home Reference (NIH)TRMT10C
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT10C  -     chr3:101561836-101566446 +  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT10C  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblTRMT10C - 3q12.3 [CytoView hg19]  TRMT10C - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBITRMT10C [Mapview hg19]  TRMT10C [Mapview hg38]
OMIM615423   616974   
Gene and transcription
Genbank (Entrez)AF086243 AF155111 AF226052 AK000439 AK026532
RefSeq transcript (Entrez)NM_017819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT10C
Cluster EST : UnigeneHs.744223 [ NCBI ]
CGAP (NCI)Hs.744223
Alternative Splicing GalleryENSG00000174173
Gene ExpressionTRMT10C [ NCBI-GEO ]   TRMT10C [ EBI - ARRAY_EXPRESS ]   TRMT10C [ SEEK ]   TRMT10C [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT10C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54931
GTEX Portal (Tissue expression)TRMT10C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L0Y3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L0Y3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L0Y3
Splice isoforms : SwissVarQ7L0Y3
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ7L0Y3
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM10 (PS51675)   
Domains : Interpro (EBI)MRPP1    MT_TRM10-typ    tRNA_m1G_MeTrfase_euk    tRNA_MeTrfase_TRMD/TRM10   
Domain families : Pfam (Sanger)tRNA_m1G_MT (PF01746)   
Domain families : Pfam (NCBI)pfam01746   
Conserved Domain (NCBI)TRMT10C
DMDM Disease mutations54931
Blocks (Seattle)TRMT10C
SuperfamilyQ7L0Y3
Human Protein AtlasENSG00000174173
Peptide AtlasQ7L0Y3
HPRD15240
IPIIPI00099996   IPI00946039   
Protein Interaction databases
DIP (DOE-UCLA)Q7L0Y3
IntAct (EBI)Q7L0Y3
FunCoupENSG00000174173
BioGRIDTRMT10C
STRING (EMBL)TRMT10C
ZODIACTRMT10C
Ontologies - Pathways
QuickGOQ7L0Y3
Ontology : AmiGOmitochondrial RNA 5'-end processing  RNA binding  protein binding  nucleoplasm  mitochondrion  mitochondrion  mitochondrial matrix  tRNA (guanine-N1-)-methyltransferase activity  tRNA (guanine-N1-)-methyltransferase activity  tRNA (adenine-N1-)-methyltransferase activity  tRNA (adenine-N1-)-methyltransferase activity  mitochondrial ribonuclease P complex  mitochondrial nucleoid  positive regulation of mitochondrial translation  mitochondrial tRNA methylation  mitochondrial tRNA processing  mitochondrial tRNA processing  
Ontology : EGO-EBImitochondrial RNA 5'-end processing  RNA binding  protein binding  nucleoplasm  mitochondrion  mitochondrion  mitochondrial matrix  tRNA (guanine-N1-)-methyltransferase activity  tRNA (guanine-N1-)-methyltransferase activity  tRNA (adenine-N1-)-methyltransferase activity  tRNA (adenine-N1-)-methyltransferase activity  mitochondrial ribonuclease P complex  mitochondrial nucleoid  positive regulation of mitochondrial translation  mitochondrial tRNA methylation  mitochondrial tRNA processing  mitochondrial tRNA processing  
NDEx NetworkTRMT10C
Atlas of Cancer Signalling NetworkTRMT10C
Wikipedia pathwaysTRMT10C
Orthology - Evolution
OrthoDB54931
GeneTree (enSembl)ENSG00000174173
Phylogenetic Trees/Animal Genes : TreeFamTRMT10C
HOVERGENQ7L0Y3
HOGENOMQ7L0Y3
Homologs : HomoloGeneTRMT10C
Homology/Alignments : Family Browser (UCSC)TRMT10C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT10C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT10C
dbVarTRMT10C
ClinVarTRMT10C
1000_GenomesTRMT10C 
Exome Variant ServerTRMT10C
ExAC (Exome Aggregation Consortium)TRMT10C (select the gene name)
Genetic variants : HAPMAP54931
Genomic Variants (DGV)TRMT10C [DGVbeta]
DECIPHERTRMT10C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT10C 
Mutations
ICGC Data PortalTRMT10C 
TCGA Data PortalTRMT10C 
Broad Tumor PortalTRMT10C
OASIS PortalTRMT10C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRMT10C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT10C
DgiDB (Drug Gene Interaction Database)TRMT10C
DoCM (Curated mutations)TRMT10C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT10C (select a term)
intoGenTRMT10C
Cancer3DTRMT10C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615423    616974   
Orphanet
MedgenTRMT10C
Genetic Testing Registry TRMT10C
NextProtQ7L0Y3 [Medical]
TSGene54931
GENETestsTRMT10C
Target ValidationTRMT10C
Huge Navigator TRMT10C [HugePedia]
snp3D : Map Gene to Disease54931
BioCentury BCIQTRMT10C
ClinGenTRMT10C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54931
Chemical/Pharm GKB GenePA134988378
Clinical trialTRMT10C
Miscellaneous
canSAR (ICR)TRMT10C (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT10C
EVEXTRMT10C
GoPubMedTRMT10C
iHOPTRMT10C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:38 CEST 2017

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