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TRMT112 (tRNA methyltransferase 11-2 homolog (S. cerevisiae))

Identity

Alias_symbol (synonym)HSPC152
HSPC170
TRM112
TRMT11-2
hTrm112
Other alias
HGNC (Hugo) TRMT112
LocusID (NCBI) 51504
Atlas_Id 75196
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64083964 and ends at 64085556 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRMT112 (11q13.1) / PRDX5 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT112   26940
Cards
Entrez_Gene (NCBI)TRMT112  51504  tRNA methyltransferase 11-2 homolog (S. cerevisiae)
AliasesHSPC152; HSPC170; TRM112; TRMT11-2
GeneCards (Weizmann)TRMT112
Ensembl hg19 (Hinxton)ENSG00000173113 [Gene_View]  chr11:64083964-64085556 [Contig_View]  TRMT112 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173113 [Gene_View]  chr11:64083964-64085556 [Contig_View]  TRMT112 [Vega]
ICGC DataPortalENSG00000173113
TCGA cBioPortalTRMT112
AceView (NCBI)TRMT112
Genatlas (Paris)TRMT112
WikiGenes51504
SOURCE (Princeton)TRMT112
Genetics Home Reference (NIH)TRMT112
Genomic and cartography
GoldenPath hg19 (UCSC)TRMT112  -     chr11:64083964-64085556 -  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRMT112  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblTRMT112 - 11q13.1 [CytoView hg19]  TRMT112 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBITRMT112 [Mapview hg19]  TRMT112 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF110774 AF161501 AF229068 AK312050 BC017172
RefSeq transcript (Entrez)NM_001286082 NM_001286084 NM_016404
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)TRMT112
Cluster EST : UnigeneHs.333579 [ NCBI ]
CGAP (NCI)Hs.333579
Alternative Splicing GalleryENSG00000173113
Gene ExpressionTRMT112 [ NCBI-GEO ]   TRMT112 [ EBI - ARRAY_EXPRESS ]   TRMT112 [ SEEK ]   TRMT112 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT112 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51504
GTEX Portal (Tissue expression)TRMT112
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI30
Splice isoforms : SwissVarQ9UI30
PhosPhoSitePlusQ9UI30
Domains : Interpro (EBI)UPF0434/Trm112   
Domain families : Pfam (Sanger)Trm112p (PF03966)   
Domain families : Pfam (NCBI)pfam03966   
Conserved Domain (NCBI)TRMT112
DMDM Disease mutations51504
Blocks (Seattle)TRMT112
SuperfamilyQ9UI30
Human Protein AtlasENSG00000173113
Peptide AtlasQ9UI30
HPRD13705
IPIIPI00009010   IPI01010288   IPI01014610   IPI01015813   IPI01015443   
Protein Interaction databases
DIP (DOE-UCLA)Q9UI30
IntAct (EBI)Q9UI30
FunCoupENSG00000173113
BioGRIDTRMT112
STRING (EMBL)TRMT112
ZODIACTRMT112
Ontologies - Pathways
QuickGOQ9UI30
Ontology : AmiGOprotein binding  protein methyltransferase activity  peptidyl-glutamine methylation  protein complex  extracellular exosome  
Ontology : EGO-EBIprotein binding  protein methyltransferase activity  peptidyl-glutamine methylation  protein complex  extracellular exosome  
NDEx NetworkTRMT112
Atlas of Cancer Signalling NetworkTRMT112
Wikipedia pathwaysTRMT112
Orthology - Evolution
OrthoDB51504
GeneTree (enSembl)ENSG00000173113
Phylogenetic Trees/Animal Genes : TreeFamTRMT112
HOVERGENQ9UI30
HOGENOMQ9UI30
Homologs : HomoloGeneTRMT112
Homology/Alignments : Family Browser (UCSC)TRMT112
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT112
dbVarTRMT112
ClinVarTRMT112
1000_GenomesTRMT112 
Exome Variant ServerTRMT112
ExAC (Exome Aggregation Consortium)TRMT112 (select the gene name)
Genetic variants : HAPMAP51504
Genomic Variants (DGV)TRMT112 [DGVbeta]
DECIPHER (Syndromes)11:64083964-64085556  ENSG00000173113
CONAN: Copy Number AnalysisTRMT112 
Mutations
ICGC Data PortalTRMT112 
TCGA Data PortalTRMT112 
Broad Tumor PortalTRMT112
OASIS PortalTRMT112 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT112  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT112
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT112
DgiDB (Drug Gene Interaction Database)TRMT112
DoCM (Curated mutations)TRMT112 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT112 (select a term)
intoGenTRMT112
Cancer3DTRMT112(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRMT112
Genetic Testing Registry TRMT112
NextProtQ9UI30 [Medical]
TSGene51504
GENETestsTRMT112
Huge Navigator TRMT112 [HugePedia]
snp3D : Map Gene to Disease51504
BioCentury BCIQTRMT112
ClinGenTRMT112
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51504
Chemical/Pharm GKB GenePA165543757
Clinical trialTRMT112
Miscellaneous
canSAR (ICR)TRMT112 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT112
EVEXTRMT112
GoPubMedTRMT112
iHOPTRMT112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:51 CET 2017

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