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TRMT13 (tRNA methyltransferase 13 homolog)

Identity

Alias_namesCCDC76
coiled-coil domain containing 76
tRNA methyltransferase 13 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ10287
FLJ11219
Other alias
HGNC (Hugo) TRMT13
LocusID (NCBI) 54482
Atlas_Id 75197
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100133150 and ends at 100150498 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

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Nomenclature
HGNC (Hugo)TRMT13   25502
Cards
Entrez_Gene (NCBI)TRMT13  54482  tRNA methyltransferase 13 homolog
AliasesCCDC76
GeneCards (Weizmann)TRMT13
Ensembl hg19 (Hinxton)ENSG00000122435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122435 [Gene_View]  chr1:100133150-100150498 [Contig_View]  TRMT13 [Vega]
ICGC DataPortalENSG00000122435
TCGA cBioPortalTRMT13
AceView (NCBI)TRMT13
Genatlas (Paris)TRMT13
WikiGenes54482
SOURCE (Princeton)TRMT13
Genetics Home Reference (NIH)TRMT13
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT13  -     chr1:100133150-100150498 +  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT13  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblTRMT13 - 1p21.2 [CytoView hg19]  TRMT13 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBITRMT13 [Mapview hg19]  TRMT13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001149 AK002081 AK289404 AK294738 AK295828
RefSeq transcript (Entrez)NM_019083
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT13
Cluster EST : UnigeneHs.729095 [ NCBI ]
CGAP (NCI)Hs.729095
Alternative Splicing GalleryENSG00000122435
Gene ExpressionTRMT13 [ NCBI-GEO ]   TRMT13 [ EBI - ARRAY_EXPRESS ]   TRMT13 [ SEEK ]   TRMT13 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54482
GTEX Portal (Tissue expression)TRMT13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUP7
Splice isoforms : SwissVarQ9NUP7
Catalytic activity : Enzyme2.1.1.225 [ Enzyme-Expasy ]   2.1.1.2252.1.1.225 [ IntEnz-EBI ]   2.1.1.225 [ BRENDA ]   2.1.1.225 [ KEGG ]   
PhosPhoSitePlusQ9NUP7
Domaine pattern : Prosite (Expaxy)ZF_CHHC_U11_48K (PS51800)   
Domains : Interpro (EBI)Methyltransferase_TRM13    TRM13/UPF0224_CHHC_Znf_dom    Znf_CCCH-type_TRM13   
Domain families : Pfam (Sanger)TRM13 (PF05206)    zf-TRM13_CCCH (PF11722)    zf-U11-48K (PF05253)   
Domain families : Pfam (NCBI)pfam05206    pfam11722    pfam05253   
Conserved Domain (NCBI)TRMT13
DMDM Disease mutations54482
Blocks (Seattle)TRMT13
SuperfamilyQ9NUP7
Human Protein AtlasENSG00000122435
Peptide AtlasQ9NUP7
HPRD07659
IPIIPI00005149   IPI00642738   IPI00479953   IPI00909814   IPI01021075   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUP7
IntAct (EBI)Q9NUP7
FunCoupENSG00000122435
BioGRIDTRMT13
STRING (EMBL)TRMT13
ZODIACTRMT13
Ontologies - Pathways
QuickGOQ9NUP7
Ontology : AmiGOtRNA methyltransferase activity  tRNA methylation  metal ion binding  
Ontology : EGO-EBItRNA methyltransferase activity  tRNA methylation  metal ion binding  
NDEx NetworkTRMT13
Atlas of Cancer Signalling NetworkTRMT13
Wikipedia pathwaysTRMT13
Orthology - Evolution
OrthoDB>/TD>=TL WIDTH=15%>54482
GeneTree (enSembl)ENSG00000122435
Phylogenetic Trees/Animal Genes : TreeFamTRMT13
HOVERGENQ9NUP7
HOGENOMQ9NUP7
Homologs : HomoloGeneTRMT13
Homology/Alignments : Family Browser (UCSC)TRMT13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT13
dbVarTRMT13
ClinVarTRMT13
1000_GenomesTRMT13 
Exome Variant ServerTRMT13
ExAC (Exome Aggregation Consortium)TRMT13 (select the gene name)
Genetic variants : HAPMAP54482
Genomic Variants (DGV)TRMT13 [DGVbeta]
DECIPHERTRMT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT13 
Mutations
ICGC Data PortalTRMT13 
TCGA Data PortalTRMT13 
Broad Tumor PortalTRMT13
OASIS PortalTRMT13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRMT13
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT13
DgiDB (Drug Gene Interaction Database)TRMT13
DoCM (Curated mutations)TRMT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT13 (select a term)
intoGenTRMT13
Cancer3DTRMT13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRMT13
Genetic Testing Registry TRMT13
NextProtQ9NUP7 [Medical]
TSGene54482
GENETestsTRMT13
Target ValidationTRMT13
Huge Navigator TRMT13 [HugePedia]
snp3D : Map Gene to Disease54482
BioCentury BCIQTRMT13
ClinGenTRMT13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54482
Chemical/Pharm GKB GenePA143485428
Clinical trialTRMT13
Miscellaneous
canSAR (ICR)TRMT13 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT13
EVEXTRMT13
GoPubMedTRMT13
iHOPTRMT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:38 CEST 2017

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