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TRMT13 (tRNA methyltransferase 13 homolog)

Identity

Alias (NCBI)CCDC76
HGNC (Hugo) TRMT13
HGNC Alias symbFLJ10287
FLJ11219
HGNC Previous nameCCDC76
HGNC Previous namecoiled-coil domain containing 76
 tRNA methyltransferase 13 homolog (S. cerevisiae)
LocusID (NCBI) 54482
Atlas_Id 75197
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100133150 and ends at 100150498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRMT13   25502
Cards
Entrez_Gene (NCBI)TRMT13    tRNA methyltransferase 13 homolog
AliasesCCDC76
GeneCards (Weizmann)TRMT13
Ensembl hg19 (Hinxton)ENSG00000122435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122435 [Gene_View]  ENSG00000122435 [Sequence]  chr1:100133150-100150498 [Contig_View]  TRMT13 [Vega]
ICGC DataPortalENSG00000122435
TCGA cBioPortalTRMT13
AceView (NCBI)TRMT13
Genatlas (Paris)TRMT13
SOURCE (Princeton)TRMT13
Genetics Home Reference (NIH)TRMT13
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT13  -     chr1:100133150-100150498 +  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT13  -     1p21.2   [Description]    (hg19-Feb_2009)
GoldenPathTRMT13 - 1p21.2 [CytoView hg19]  TRMT13 - 1p21.2 [CytoView hg38]
ImmunoBaseENSG00000122435
Genome Data Viewer NCBITRMT13 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001149 AK002081 AK289404 AK294738 AK295828
RefSeq transcript (Entrez)NM_001393409 NM_001393410 NM_001393411 NM_001393412 NM_001393413 NM_001393414 NM_019083
Consensus coding sequences : CCDS (NCBI)TRMT13
Gene ExpressionTRMT13 [ NCBI-GEO ]   TRMT13 [ EBI - ARRAY_EXPRESS ]   TRMT13 [ SEEK ]   TRMT13 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT13 [ Firebrowse - Broad ]
GenevisibleExpression of TRMT13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54482
GTEX Portal (Tissue expression)TRMT13
Human Protein AtlasENSG00000122435-TRMT13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUP7
Catalytic activity : Enzyme2.1.1.225 [ Enzyme-Expasy ]   2.1.1.2252.1.1.225 [ IntEnz-EBI ]   2.1.1.225 [ BRENDA ]   2.1.1.225 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9NUP7
Domaine pattern : Prosite (Expaxy)ZF_CHHC_U11_48K (PS51800)   
Domains : Interpro (EBI)Methyltransferase_TRM13    Trm13    TRM13/UPF0224_CHHC_Znf_dom    Znf_CCCH-type_TRM13   
Domain families : Pfam (Sanger)TRM13 (PF05206)    zf-TRM13_CCCH (PF11722)    zf-U11-48K (PF05253)   
Domain families : Pfam (NCBI)pfam05206    pfam11722    pfam05253   
Conserved Domain (NCBI)TRMT13
SuperfamilyQ9NUP7
AlphaFold pdb e-kbQ9NUP7   
Human Protein Atlas [tissue]ENSG00000122435-TRMT13 [tissue]
HPRD07659
Protein Interaction databases
DIP (DOE-UCLA)Q9NUP7
IntAct (EBI)Q9NUP7
BioGRIDTRMT13
STRING (EMBL)TRMT13
ZODIACTRMT13
Ontologies - Pathways
QuickGOQ9NUP7
Ontology : AmiGOtRNA methyltransferase activity  tRNA methylation  metal ion binding  tRNA 2'-O-methyltransferase activity  
Ontology : EGO-EBItRNA methyltransferase activity  tRNA methylation  metal ion binding  tRNA 2'-O-methyltransferase activity  
NDEx NetworkTRMT13
Atlas of Cancer Signalling NetworkTRMT13
Wikipedia pathwaysTRMT13
Orthology - Evolution
OrthoDB54482
GeneTree (enSembl)ENSG00000122435
Phylogenetic Trees/Animal Genes : TreeFamTRMT13
Homologs : HomoloGeneTRMT13
Homology/Alignments : Family Browser (UCSC)TRMT13
Gene fusions - Rearrangements
Fusion : QuiverTRMT13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT13
dbVarTRMT13
ClinVarTRMT13
MonarchTRMT13
1000_GenomesTRMT13 
Exome Variant ServerTRMT13
GNOMAD BrowserENSG00000122435
Varsome BrowserTRMT13
ACMGTRMT13 variants
VarityQ9NUP7
Genomic Variants (DGV)TRMT13 [DGVbeta]
DECIPHERTRMT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT13 
Mutations
ICGC Data PortalTRMT13 
TCGA Data PortalTRMT13 
Broad Tumor PortalTRMT13
OASIS PortalTRMT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMT13
Mutations and Diseases : HGMDTRMT13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRMT13
DgiDB (Drug Gene Interaction Database)TRMT13
DoCM (Curated mutations)TRMT13
CIViC (Clinical Interpretations of Variants in Cancer)TRMT13
Cancer3DTRMT13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRMT13
MedgenTRMT13
Genetic Testing Registry TRMT13
NextProtQ9NUP7 [Medical]
GENETestsTRMT13
Target ValidationTRMT13
Huge Navigator TRMT13 [HugePedia]
ClinGenTRMT13
Clinical trials, drugs, therapy
MyCancerGenomeTRMT13
Protein Interactions : CTDTRMT13
Pharm GKB GenePA143485428
PharosQ9NUP7
Clinical trialTRMT13
Miscellaneous
canSAR (ICR)TRMT13
HarmonizomeTRMT13
DataMed IndexTRMT13
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRMT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:03 CEST 2021

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