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TRMT1L (tRNA methyltransferase 1 like)

Identity

Alias (NCBI)C1orf25
MST070
MSTP070
TRM1L
bG120K12.3
HGNC (Hugo) TRMT1L
HGNC Alias nameTRM1-like
HGNC Previous nameC1orf25
HGNC Previous namechromosome 1 open reading frame 25
 TRM1 tRNA methyltransferase 1-like
 tRNA methyltransferase 1 homolog (S. cerevisiae)-like
 tRNA methyltransferase 1-like
LocusID (NCBI) 81627
Atlas_Id 54724
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 185118103 and ends at 185156953 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
XPR1 (1q25.3) / TRMT1L (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRMT1L   16782
Cards
Entrez_Gene (NCBI)TRMT1L    tRNA methyltransferase 1 like
AliasesC1orf25; MST070; MSTP070; TRM1L; 
bG120K12.3
GeneCards (Weizmann)TRMT1L
Ensembl hg19 (Hinxton)ENSG00000121486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121486 [Gene_View]  ENSG00000121486 [Sequence]  chr1:185118103-185156953 [Contig_View]  TRMT1L [Vega]
ICGC DataPortalENSG00000121486
TCGA cBioPortalTRMT1L
AceView (NCBI)TRMT1L
Genatlas (Paris)TRMT1L
SOURCE (Princeton)TRMT1L
Genetics Home Reference (NIH)TRMT1L
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT1L  -     chr1:185118103-185156953 -  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT1L  -     1q25.3   [Description]    (hg19-Feb_2009)
GoldenPathTRMT1L - 1q25.3 [CytoView hg19]  TRMT1L - 1q25.3 [CytoView hg38]
ImmunoBaseENSG00000121486
Genome Data Viewer NCBITRMT1L [Mapview hg19]  
OMIM611673   
Gene and transcription
Genbank (Entrez)AF163261 AF288399 AK027418 AK074936 AK074993
RefSeq transcript (Entrez)NM_001202423 NM_030934
Consensus coding sequences : CCDS (NCBI)TRMT1L
Gene ExpressionTRMT1L [ NCBI-GEO ]   TRMT1L [ EBI - ARRAY_EXPRESS ]   TRMT1L [ SEEK ]   TRMT1L [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT1L [ Firebrowse - Broad ]
GenevisibleExpression of TRMT1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81627
GTEX Portal (Tissue expression)TRMT1L
Human Protein AtlasENSG00000121486-TRMT1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2T5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2T5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2T5
PhosPhoSitePlusQ7Z2T5
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM1 (PS51626)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SAM-dependent_MTases    Trm1    tRNA_met_Trm1_C    Znf_C2H2_type   
Domain families : Pfam (Sanger)TRM (PF02005)   
Domain families : Pfam (NCBI)pfam02005   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)TRMT1L
SuperfamilyQ7Z2T5
AlphaFold pdb e-kbQ7Z2T5   
Human Protein Atlas [tissue]ENSG00000121486-TRMT1L [tissue]
HPRD12722
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2T5
IntAct (EBI)Q7Z2T5
BioGRIDTRMT1L
STRING (EMBL)TRMT1L
ZODIACTRMT1L
Ontologies - Pathways
QuickGOQ7Z2T5
Ontology : AmiGOtRNA binding  tRNA N2-guanine methylation  RNA binding  tRNA (guanine-N2-)-methyltransferase activity  protein binding  nucleus  behavior  metal ion binding  
Ontology : EGO-EBItRNA binding  tRNA N2-guanine methylation  RNA binding  tRNA (guanine-N2-)-methyltransferase activity  protein binding  nucleus  behavior  metal ion binding  
NDEx NetworkTRMT1L
Atlas of Cancer Signalling NetworkTRMT1L
Wikipedia pathwaysTRMT1L
Orthology - Evolution
OrthoDB81627
GeneTree (enSembl)ENSG00000121486
Phylogenetic Trees/Animal Genes : TreeFamTRMT1L
Homologs : HomoloGeneTRMT1L
Homology/Alignments : Family Browser (UCSC)TRMT1L
Gene fusions - Rearrangements
Fusion : MitelmanXPR1/TRMT1L [1q25.3/1q25.3]  
Fusion : QuiverTRMT1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT1L
dbVarTRMT1L
ClinVarTRMT1L
MonarchTRMT1L
1000_GenomesTRMT1L 
Exome Variant ServerTRMT1L
GNOMAD BrowserENSG00000121486
Varsome BrowserTRMT1L
ACMGTRMT1L variants
VarityQ7Z2T5
Genomic Variants (DGV)TRMT1L [DGVbeta]
DECIPHERTRMT1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT1L 
Mutations
ICGC Data PortalTRMT1L 
TCGA Data PortalTRMT1L 
Broad Tumor PortalTRMT1L
OASIS PortalTRMT1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMT1L
Mutations and Diseases : HGMDTRMT1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRMT1L
DgiDB (Drug Gene Interaction Database)TRMT1L
DoCM (Curated mutations)TRMT1L
CIViC (Clinical Interpretations of Variants in Cancer)TRMT1L
Cancer3DTRMT1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611673   
Orphanet
DisGeNETTRMT1L
MedgenTRMT1L
Genetic Testing Registry TRMT1L
NextProtQ7Z2T5 [Medical]
GENETestsTRMT1L
Target ValidationTRMT1L
Huge Navigator TRMT1L [HugePedia]
ClinGenTRMT1L
Clinical trials, drugs, therapy
MyCancerGenomeTRMT1L
Protein Interactions : CTDTRMT1L
Pharm GKB GenePA25612
PharosQ7Z2T5
Clinical trialTRMT1L
Miscellaneous
canSAR (ICR)TRMT1L
HarmonizomeTRMT1L
DataMed IndexTRMT1L
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRMT1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:28 CEST 2021

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