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TRMT44 (tRNA methyltransferase 44 homolog (S. cerevisiae))

Identity

Alias_namesC4orf23
METTL19
chromosome 4 open reading frame 23
methyltransferase like 19
Alias_symbol (synonym)FLJ35725
TRM44
Other alias
HGNC (Hugo) TRMT44
LocusID (NCBI) 152992
Atlas_Id 75198
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 8440797 and ends at 8476555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT44   26653
Cards
Entrez_Gene (NCBI)TRMT44  152992  tRNA methyltransferase 44 homolog (S. cerevisiae)
AliasesC4orf23; METTL19; TRM44
GeneCards (Weizmann)TRMT44
Ensembl hg19 (Hinxton)ENSG00000155275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155275 [Gene_View]  chr4:8440797-8476555 [Contig_View]  TRMT44 [Vega]
ICGC DataPortalENSG00000155275
TCGA cBioPortalTRMT44
AceView (NCBI)TRMT44
Genatlas (Paris)TRMT44
WikiGenes152992
SOURCE (Princeton)TRMT44
Genetics Home Reference (NIH)TRMT44
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT44  -     chr4:8440797-8476555 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT44  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblTRMT44 - 4p16.1 [CytoView hg19]  TRMT44 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBITRMT44 [Mapview hg19]  TRMT44 [Mapview hg38]
OMIM614309   
Gene and transcription
Genbank (Entrez)AK022953 AK092387 AK093044 AK096417 AW001883
RefSeq transcript (Entrez)NM_001031742 NM_001350233 NM_024950 NM_152544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT44
Cluster EST : UnigeneHs.734761 [ NCBI ]
CGAP (NCI)Hs.734761
Alternative Splicing GalleryENSG00000155275
Gene ExpressionTRMT44 [ NCBI-GEO ]   TRMT44 [ EBI - ARRAY_EXPRESS ]   TRMT44 [ SEEK ]   TRMT44 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152992
GTEX Portal (Tissue expression)TRMT44
Human Protein AtlasENSG00000155275-TRMT44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYL2
Splice isoforms : SwissVarQ8IYL2
Catalytic activity : Enzyme2.1.1.211 [ Enzyme-Expasy ]   2.1.1.2112.1.1.211 [ IntEnz-EBI ]   2.1.1.211 [ BRENDA ]   2.1.1.211 [ KEGG ]   
PhosPhoSitePlusQ8IYL2
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)SAM-dependent_MTases    tRNA_uracil_MeTrfase    Znf_CCCH   
Domain families : Pfam (Sanger)AdoMet_MTase (PF07757)   
Domain families : Pfam (NCBI)pfam07757   
Conserved Domain (NCBI)TRMT44
DMDM Disease mutations152992
Blocks (Seattle)TRMT44
SuperfamilyQ8IYL2
Human Protein Atlas [tissue]ENSG00000155275-TRMT44 [tissue]
Peptide AtlasQ8IYL2
HPRD08760
IPIIPI00742698   IPI00787404   IPI00815805   IPI00978706   IPI00977076   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYL2
IntAct (EBI)Q8IYL2
FunCoupENSG00000155275
BioGRIDTRMT44
STRING (EMBL)TRMT44
ZODIACTRMT44
Ontologies - Pathways
QuickGOQ8IYL2
Ontology : AmiGOcytoplasm  tRNA (uracil) methyltransferase activity  tRNA methylation  metal ion binding  
Ontology : EGO-EBIcytoplasm  tRNA (uracil) methyltransferase activity  tRNA methylation  metal ion binding  
NDEx NetworkTRMT44
Atlas of Cancer Signalling NetworkTRMT44
Wikipedia pathwaysTRMT44
Orthology - Evolution
OrthoDB152992
GeneTree (enSembl)ENSG00000155275
Phylogenetic Trees/Animal Genes : TreeFamTRMT44
HOVERGENQ8IYL2
HOGENOMQ8IYL2
Homologs : HomoloGeneTRMT44
Homology/Alignments : Family Browser (UCSC)TRMT44
Gene fusions - Rearrangements
Fusion: Tumor Portal TRMT44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT44
dbVarTRMT44
ClinVarTRMT44
1000_GenomesTRMT44 
Exome Variant ServerTRMT44
ExAC (Exome Aggregation Consortium)ENSG00000155275
GNOMAD BrowserENSG00000155275
Genetic variants : HAPMAP152992
Genomic Variants (DGV)TRMT44 [DGVbeta]
DECIPHERTRMT44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT44 
Mutations
ICGC Data PortalTRMT44 
TCGA Data PortalTRMT44 
Broad Tumor PortalTRMT44
OASIS PortalTRMT44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT44
BioMutasearch TRMT44
DgiDB (Drug Gene Interaction Database)TRMT44
DoCM (Curated mutations)TRMT44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT44 (select a term)
intoGenTRMT44
Cancer3DTRMT44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614309   
Orphanet
MedgenTRMT44
Genetic Testing Registry TRMT44
NextProtQ8IYL2 [Medical]
TSGene152992
GENETestsTRMT44
Target ValidationTRMT44
Huge Navigator TRMT44 [HugePedia]
snp3D : Map Gene to Disease152992
BioCentury BCIQTRMT44
ClinGenTRMT44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152992
Chemical/Pharm GKB GenePA145008869
Clinical trialTRMT44
Miscellaneous
canSAR (ICR)TRMT44 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT44
EVEXTRMT44
GoPubMedTRMT44
iHOPTRMT44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:07 CET 2017

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