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TRMT5 (tRNA methyltransferase 5)

Identity

Alias_namesKIAA1393
KIAA1393
tRNA methyltransferase 5 homolog (S. cerevisiae)
Alias_symbol (synonym)TRM5
Other aliasCOXPD26
HGNC (Hugo) TRMT5
LocusID (NCBI) 57570
Atlas_Id 75199
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 60971449 and ends at 60981690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPL38 (17q25.1) / TRMT5 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT5   23141
Cards
Entrez_Gene (NCBI)TRMT5  57570  tRNA methyltransferase 5
AliasesCOXPD26; KIAA1393; TRM5
GeneCards (Weizmann)TRMT5
Ensembl hg19 (Hinxton)ENSG00000126814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126814 [Gene_View]  chr14:60971449-60981690 [Contig_View]  TRMT5 [Vega]
ICGC DataPortalENSG00000126814
TCGA cBioPortalTRMT5
AceView (NCBI)TRMT5
Genatlas (Paris)TRMT5
WikiGenes57570
SOURCE (Princeton)TRMT5
Genetics Home Reference (NIH)TRMT5
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT5  -     chr14:60971449-60981690 -  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT5  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblTRMT5 - 14q23.1 [CytoView hg19]  TRMT5 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBITRMT5 [Mapview hg19]  TRMT5 [Mapview hg38]
OMIM611023   616539   
Gene and transcription
Genbank (Entrez)AB037814 AK293158 BC029638 BC063551 BC108284
RefSeq transcript (Entrez)NM_001350253 NM_001350254 NM_020810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT5
Cluster EST : UnigeneHs.380159 [ NCBI ]
CGAP (NCI)Hs.380159
Alternative Splicing GalleryENSG00000126814
Gene ExpressionTRMT5 [ NCBI-GEO ]   TRMT5 [ EBI - ARRAY_EXPRESS ]   TRMT5 [ SEEK ]   TRMT5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57570
GTEX Portal (Tissue expression)TRMT5
Human Protein AtlasENSG00000126814-TRMT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32P41   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32P41  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32P41
Splice isoforms : SwissVarQ32P41
PhosPhoSitePlusQ32P41
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM5_TYW2 (PS51684)   
Domains : Interpro (EBI)MeTrfase_TRM5/TYW2    SAM-dependent_MTases    tRNA_Gua_MeTrfase_euk   
Domain families : Pfam (Sanger)Met_10 (PF02475)   
Domain families : Pfam (NCBI)pfam02475   
Conserved Domain (NCBI)TRMT5
DMDM Disease mutations57570
Blocks (Seattle)TRMT5
SuperfamilyQ32P41
Human Protein Atlas [tissue]ENSG00000126814-TRMT5 [tissue]
Peptide AtlasQ32P41
HPRD17213
IPIIPI00455268   IPI01026479   IPI01026398   
Protein Interaction databases
DIP (DOE-UCLA)Q32P41
IntAct (EBI)Q32P41
FunCoupENSG00000126814
BioGRIDTRMT5
STRING (EMBL)TRMT5
ZODIACTRMT5
Ontologies - Pathways
QuickGOQ32P41
Ontology : AmiGOnucleus  mitochondrial matrix  tRNA (guanine(37)-N(1))-methyltransferase activity  mitochondrial tRNA methylation  
Ontology : EGO-EBInucleus  mitochondrial matrix  tRNA (guanine(37)-N(1))-methyltransferase activity  mitochondrial tRNA methylation  
NDEx NetworkTRMT5
Atlas of Cancer Signalling NetworkTRMT5
Wikipedia pathwaysTRMT5
Orthology - Evolution
OrthoDB57570
GeneTree (enSembl)ENSG00000126814
Phylogenetic Trees/Animal Genes : TreeFamTRMT5
HOVERGENQ32P41
HOGENOMQ32P41
Homologs : HomoloGeneTRMT5
Homology/Alignments : Family Browser (UCSC)TRMT5
Gene fusions - Rearrangements
Fusion: Tumor Portal TRMT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT5
dbVarTRMT5
ClinVarTRMT5
1000_GenomesTRMT5 
Exome Variant ServerTRMT5
ExAC (Exome Aggregation Consortium)ENSG00000126814
GNOMAD BrowserENSG00000126814
Genetic variants : HAPMAP57570
Genomic Variants (DGV)TRMT5 [DGVbeta]
DECIPHERTRMT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT5 
Mutations
ICGC Data PortalTRMT5 
TCGA Data PortalTRMT5 
Broad Tumor PortalTRMT5
OASIS PortalTRMT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT5
DgiDB (Drug Gene Interaction Database)TRMT5
DoCM (Curated mutations)TRMT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT5 (select a term)
intoGenTRMT5
Cancer3DTRMT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611023    616539   
Orphanet
MedgenTRMT5
Genetic Testing Registry TRMT5
NextProtQ32P41 [Medical]
TSGene57570
GENETestsTRMT5
Target ValidationTRMT5
Huge Navigator TRMT5 [HugePedia]
snp3D : Map Gene to Disease57570
BioCentury BCIQTRMT5
ClinGenTRMT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57570
Chemical/Pharm GKB GenePA134952106
Clinical trialTRMT5
Miscellaneous
canSAR (ICR)TRMT5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT5
EVEXTRMT5
GoPubMedTRMT5
iHOPTRMT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:07 CET 2017

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