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TRMT5 (tRNA methyltransferase 5)

Identity

Alias (NCBI)COXPD26
KIAA1393
TRM5
HGNC (Hugo) TRMT5
HGNC Alias symbTRM5
HGNC Alias nametRNA (guanine(37)-N1)-methyltransferase
HGNC Previous nameKIAA1393
HGNC Previous nameKIAA1393
 tRNA methyltransferase 5 homolog (S. cerevisiae)
LocusID (NCBI) 57570
Atlas_Id 75199
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 60971449 and ends at 60981079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPL38 (17q25.1) / TRMT5 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRMT5   23141
Cards
Entrez_Gene (NCBI)TRMT5    tRNA methyltransferase 5
AliasesCOXPD26; KIAA1393; TRM5
GeneCards (Weizmann)TRMT5
Ensembl hg19 (Hinxton)ENSG00000126814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126814 [Gene_View]  ENSG00000126814 [Sequence]  chr14:60971449-60981079 [Contig_View]  TRMT5 [Vega]
ICGC DataPortalENSG00000126814
TCGA cBioPortalTRMT5
AceView (NCBI)TRMT5
Genatlas (Paris)TRMT5
SOURCE (Princeton)TRMT5
Genetics Home Reference (NIH)TRMT5
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT5  -     chr14:60971449-60981079 -  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT5  -     14q23.1   [Description]    (hg19-Feb_2009)
GoldenPathTRMT5 - 14q23.1 [CytoView hg19]  TRMT5 - 14q23.1 [CytoView hg38]
ImmunoBaseENSG00000126814
Genome Data Viewer NCBITRMT5 [Mapview hg19]  
OMIM611023   616539   
Gene and transcription
Genbank (Entrez)AB037814 AK293158 BC029638 BC063551 BC108284
RefSeq transcript (Entrez)NM_001350253 NM_001350254 NM_020810
Consensus coding sequences : CCDS (NCBI)TRMT5
Gene ExpressionTRMT5 [ NCBI-GEO ]   TRMT5 [ EBI - ARRAY_EXPRESS ]   TRMT5 [ SEEK ]   TRMT5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT5 [ Firebrowse - Broad ]
GenevisibleExpression of TRMT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57570
GTEX Portal (Tissue expression)TRMT5
Human Protein AtlasENSG00000126814-TRMT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32P41   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32P41  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32P41
PhosPhoSitePlusQ32P41
Domaine pattern : Prosite (Expaxy)SAM_MT_TRM5_TYW2 (PS51684)   
Domains : Interpro (EBI)MeTrfase_TRM5/TYW2    SAM-dependent_MTases    tRNA_Gua_MeTrfase_euk   
Domain families : Pfam (Sanger)Met_10 (PF02475)   
Domain families : Pfam (NCBI)pfam02475   
Conserved Domain (NCBI)TRMT5
SuperfamilyQ32P41
AlphaFold pdb e-kbQ32P41   
Human Protein Atlas [tissue]ENSG00000126814-TRMT5 [tissue]
HPRD17213
Protein Interaction databases
DIP (DOE-UCLA)Q32P41
IntAct (EBI)Q32P41
BioGRIDTRMT5
STRING (EMBL)TRMT5
ZODIACTRMT5
Ontologies - Pathways
QuickGOQ32P41
Ontology : AmiGOtRNA N1-guanine methylation  nucleus  cytoplasm  mitochondrial matrix  mitochondrial matrix  tRNA methyltransferase activity  tRNA (guanine-N1-)-methyltransferase activity  tRNA methylation  tRNA (guanine(37)-N(1))-methyltransferase activity  mitochondrial tRNA methylation  mitochondrial tRNA methylation  
Ontology : EGO-EBItRNA N1-guanine methylation  nucleus  cytoplasm  mitochondrial matrix  mitochondrial matrix  tRNA methyltransferase activity  tRNA (guanine-N1-)-methyltransferase activity  tRNA methylation  tRNA (guanine(37)-N(1))-methyltransferase activity  mitochondrial tRNA methylation  mitochondrial tRNA methylation  
NDEx NetworkTRMT5
Atlas of Cancer Signalling NetworkTRMT5
Wikipedia pathwaysTRMT5
Orthology - Evolution
OrthoDB57570
GeneTree (enSembl)ENSG00000126814
Phylogenetic Trees/Animal Genes : TreeFamTRMT5
Homologs : HomoloGeneTRMT5
Homology/Alignments : Family Browser (UCSC)TRMT5
Gene fusions - Rearrangements
Fusion : QuiverTRMT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT5
dbVarTRMT5
ClinVarTRMT5
MonarchTRMT5
1000_GenomesTRMT5 
Exome Variant ServerTRMT5
GNOMAD BrowserENSG00000126814
Varsome BrowserTRMT5
ACMGTRMT5 variants
VarityQ32P41
Genomic Variants (DGV)TRMT5 [DGVbeta]
DECIPHERTRMT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT5 
Mutations
ICGC Data PortalTRMT5 
TCGA Data PortalTRMT5 
Broad Tumor PortalTRMT5
OASIS PortalTRMT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMT5
Mutations and Diseases : HGMDTRMT5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRMT5
DgiDB (Drug Gene Interaction Database)TRMT5
DoCM (Curated mutations)TRMT5
CIViC (Clinical Interpretations of Variants in Cancer)TRMT5
Cancer3DTRMT5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611023    616539   
Orphanet
DisGeNETTRMT5
MedgenTRMT5
Genetic Testing Registry TRMT5
NextProtQ32P41 [Medical]
GENETestsTRMT5
Target ValidationTRMT5
Huge Navigator TRMT5 [HugePedia]
ClinGenTRMT5
Clinical trials, drugs, therapy
MyCancerGenomeTRMT5
Protein Interactions : CTDTRMT5
Pharm GKB GenePA134952106
PharosQ32P41
Clinical trialTRMT5
Miscellaneous
canSAR (ICR)TRMT5
HarmonizomeTRMT5
DataMed IndexTRMT5
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRMT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:03 CEST 2021

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