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TRMT6 (tRNA methyltransferase 6)

Identity

Alias_namestRNA methyltransferase 6 homolog (S. cerevisiae)
Alias_symbol (synonym)GCD10
MGC5029
Gcd10p
CGI-09
Other alias
HGNC (Hugo) TRMT6
LocusID (NCBI) 51605
Atlas_Id 75200
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 5937833 and ends at 5950558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT6   20900
Cards
Entrez_Gene (NCBI)TRMT6  51605  tRNA methyltransferase 6
AliasesCGI-09; GCD10; Gcd10p
GeneCards (Weizmann)TRMT6
Ensembl hg19 (Hinxton)ENSG00000089195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089195 [Gene_View]  chr20:5937833-5950558 [Contig_View]  TRMT6 [Vega]
ICGC DataPortalENSG00000089195
TCGA cBioPortalTRMT6
AceView (NCBI)TRMT6
Genatlas (Paris)TRMT6
WikiGenes51605
SOURCE (Princeton)TRMT6
Genetics Home Reference (NIH)TRMT6
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT6  -     chr20:5937833-5950558 -  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT6  -     20p12.3   [Description]    (hg19-Feb_2009)
EnsemblTRMT6 - 20p12.3 [CytoView hg19]  TRMT6 - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBITRMT6 [Mapview hg19]  TRMT6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032979 AF132943 AI291549 AK000613 AK300812
RefSeq transcript (Entrez)NM_001281467 NM_015939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT6
Cluster EST : UnigeneHs.128791 [ NCBI ]
CGAP (NCI)Hs.128791
Alternative Splicing GalleryENSG00000089195
Gene ExpressionTRMT6 [ NCBI-GEO ]   TRMT6 [ EBI - ARRAY_EXPRESS ]   TRMT6 [ SEEK ]   TRMT6 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51605
GTEX Portal (Tissue expression)TRMT6
Human Protein AtlasENSG00000089195-TRMT6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJA5
Splice isoforms : SwissVarQ9UJA5
PhosPhoSitePlusQ9UJA5
Domains : Interpro (EBI)TRM6   
Domain families : Pfam (Sanger)Gcd10p (PF04189)   
Domain families : Pfam (NCBI)pfam04189   
Conserved Domain (NCBI)TRMT6
DMDM Disease mutations51605
Blocks (Seattle)TRMT6
PDB (SRS)5CCB    5CCX    5CD1   
PDB (PDBSum)5CCB    5CCX    5CD1   
PDB (IMB)5CCB    5CCX    5CD1   
PDB (RSDB)5CCB    5CCX    5CD1   
Structural Biology KnowledgeBase5CCB    5CCX    5CD1   
SCOP (Structural Classification of Proteins)5CCB    5CCX    5CD1   
CATH (Classification of proteins structures)5CCB    5CCX    5CD1   
SuperfamilyQ9UJA5
Human Protein Atlas [tissue]ENSG00000089195-TRMT6 [tissue]
Peptide AtlasQ9UJA5
HPRD13027
IPIIPI00099311   IPI00155747   IPI00885131   IPI01013230   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJA5
IntAct (EBI)Q9UJA5
FunCoupENSG00000089195
BioGRIDTRMT6
STRING (EMBL)TRMT6
ZODIACTRMT6
Ontologies - Pathways
QuickGOQ9UJA5
Ontology : AmiGORNA binding  nucleoplasm  tRNA modification  tRNA methylation  tRNA (m1A) methyltransferase complex  
Ontology : EGO-EBIRNA binding  nucleoplasm  tRNA modification  tRNA methylation  tRNA (m1A) methyltransferase complex  
NDEx NetworkTRMT6
Atlas of Cancer Signalling NetworkTRMT6
Wikipedia pathwaysTRMT6
Orthology - Evolution
OrthoDB51605
GeneTree (enSembl)ENSG00000089195
Phylogenetic Trees/Animal Genes : TreeFamTRMT6
HOVERGENQ9UJA5
HOGENOMQ9UJA5
Homologs : HomoloGeneTRMT6
Homology/Alignments : Family Browser (UCSC)TRMT6
Gene fusions - Rearrangements
Tumor Fusion PortalTRMT6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT6
dbVarTRMT6
ClinVarTRMT6
1000_GenomesTRMT6 
Exome Variant ServerTRMT6
ExAC (Exome Aggregation Consortium)ENSG00000089195
GNOMAD BrowserENSG00000089195
Genetic variants : HAPMAP51605
Genomic Variants (DGV)TRMT6 [DGVbeta]
DECIPHERTRMT6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT6 
Mutations
ICGC Data PortalTRMT6 
TCGA Data PortalTRMT6 
Broad Tumor PortalTRMT6
OASIS PortalTRMT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT6
DgiDB (Drug Gene Interaction Database)TRMT6
DoCM (Curated mutations)TRMT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT6 (select a term)
intoGenTRMT6
Cancer3DTRMT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRMT6
MedgenTRMT6
Genetic Testing Registry TRMT6
NextProtQ9UJA5 [Medical]
TSGene51605
GENETestsTRMT6
Target ValidationTRMT6
Huge Navigator TRMT6 [HugePedia]
snp3D : Map Gene to Disease51605
BioCentury BCIQTRMT6
ClinGenTRMT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51605
Chemical/Pharm GKB GenePA162407063
Clinical trialTRMT6
Miscellaneous
canSAR (ICR)TRMT6 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT6
EVEXTRMT6
GoPubMedTRMT6
iHOPTRMT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:42:24 CET 2017

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