Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRMT61A (tRNA methyltransferase 61A)

Identity

Alias_namesC14orf172
chromosome 14 open reading frame 172
tRNA methyltransferase 61 homolog A (S. cerevisiae)
Alias_symbol (synonym)FLJ40452
GCD14
Gcd14p
hTRM61
Other aliasTRM61
HGNC (Hugo) TRMT61A
LocusID (NCBI) 115708
Atlas_Id 75201
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 103529172 and ends at 103537073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NINJ1 (9q22.31) / TRMT61A (14q32.32)TRMT61A (14q32.32) / TRMT61A (14q32.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT61A   23790
Cards
Entrez_Gene (NCBI)TRMT61A  115708  tRNA methyltransferase 61A
AliasesC14orf172; GCD14; Gcd14p; TRM61; 
hTRM61
GeneCards (Weizmann)TRMT61A
Ensembl hg19 (Hinxton)ENSG00000166166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166166 [Gene_View]  chr14:103529172-103537073 [Contig_View]  TRMT61A [Vega]
ICGC DataPortalENSG00000166166
TCGA cBioPortalTRMT61A
AceView (NCBI)TRMT61A
Genatlas (Paris)TRMT61A
WikiGenes115708
SOURCE (Princeton)TRMT61A
Genetics Home Reference (NIH)TRMT61A
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT61A  -     chr14:103529172-103537073 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT61A  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblTRMT61A - 14q32.33 [CytoView hg19]  TRMT61A - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBITRMT61A [Mapview hg19]  TRMT61A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097771 BC007241 BC010167 BC016033 BQ015210
RefSeq transcript (Entrez)NM_152307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT61A
Cluster EST : UnigeneHs.525610 [ NCBI ]
CGAP (NCI)Hs.525610
Alternative Splicing GalleryENSG00000166166
Gene ExpressionTRMT61A [ NCBI-GEO ]   TRMT61A [ EBI - ARRAY_EXPRESS ]   TRMT61A [ SEEK ]   TRMT61A [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT61A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115708
GTEX Portal (Tissue expression)TRMT61A
Human Protein AtlasENSG00000166166-TRMT61A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FX7
Splice isoforms : SwissVarQ96FX7
PhosPhoSitePlusQ96FX7
Domaine pattern : Prosite (Expaxy)SAM_TRM61 (PS51620)   
Domains : Interpro (EBI)SAM-dependent_MTases    tRNA_MeTrfase_Gcd14   
Domain families : Pfam (Sanger)GCD14 (PF08704)   
Domain families : Pfam (NCBI)pfam08704   
Conserved Domain (NCBI)TRMT61A
DMDM Disease mutations115708
Blocks (Seattle)TRMT61A
PDB (SRS)5CCB    5CCX    5CD1   
PDB (PDBSum)5CCB    5CCX    5CD1   
PDB (IMB)5CCB    5CCX    5CD1   
PDB (RSDB)5CCB    5CCX    5CD1   
Structural Biology KnowledgeBase5CCB    5CCX    5CD1   
SCOP (Structural Classification of Proteins)5CCB    5CCX    5CD1   
CATH (Classification of proteins structures)5CCB    5CCX    5CD1   
SuperfamilyQ96FX7
Human Protein Atlas [tissue]ENSG00000166166-TRMT61A [tissue]
Peptide AtlasQ96FX7
HPRD08810
IPIIPI00783197   IPI00059718   IPI00177856   IPI00983484   
Protein Interaction databases
DIP (DOE-UCLA)Q96FX7
IntAct (EBI)Q96FX7
FunCoupENSG00000166166
BioGRIDTRMT61A
STRING (EMBL)TRMT61A
ZODIACTRMT61A
Ontologies - Pathways
QuickGOQ96FX7
Ontology : AmiGOnucleus  nucleoplasm  tRNA modification  tRNA (adenine-N1-)-methyltransferase activity  tRNA methylation  tRNA (m1A) methyltransferase complex  
Ontology : EGO-EBInucleus  nucleoplasm  tRNA modification  tRNA (adenine-N1-)-methyltransferase activity  tRNA methylation  tRNA (m1A) methyltransferase complex  
NDEx NetworkTRMT61A
Atlas of Cancer Signalling NetworkTRMT61A
Wikipedia pathwaysTRMT61A
Orthology - Evolution
OrthoDB115708
GeneTree (enSembl)ENSG00000166166
Phylogenetic Trees/Animal Genes : TreeFamTRMT61A
HOVERGENQ96FX7
HOGENOMQ96FX7
Homologs : HomoloGeneTRMT61A
Homology/Alignments : Family Browser (UCSC)TRMT61A
Gene fusions - Rearrangements
Tumor Fusion PortalTRMT61A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT61A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT61A
dbVarTRMT61A
ClinVarTRMT61A
1000_GenomesTRMT61A 
Exome Variant ServerTRMT61A
ExAC (Exome Aggregation Consortium)ENSG00000166166
GNOMAD BrowserENSG00000166166
Genetic variants : HAPMAP115708
Genomic Variants (DGV)TRMT61A [DGVbeta]
DECIPHERTRMT61A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT61A 
Mutations
ICGC Data PortalTRMT61A 
TCGA Data PortalTRMT61A 
Broad Tumor PortalTRMT61A
OASIS PortalTRMT61A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT61A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT61A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT61A
DgiDB (Drug Gene Interaction Database)TRMT61A
DoCM (Curated mutations)TRMT61A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT61A (select a term)
intoGenTRMT61A
Cancer3DTRMT61A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRMT61A
MedgenTRMT61A
Genetic Testing Registry TRMT61A
NextProtQ96FX7 [Medical]
TSGene115708
GENETestsTRMT61A
Target ValidationTRMT61A
Huge Navigator TRMT61A [HugePedia]
snp3D : Map Gene to Disease115708
BioCentury BCIQTRMT61A
ClinGenTRMT61A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115708
Chemical/Pharm GKB GenePA164726783
Clinical trialTRMT61A
Miscellaneous
canSAR (ICR)TRMT61A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT61A
EVEXTRMT61A
GoPubMedTRMT61A
iHOPTRMT61A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:30:48 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.