Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRMT61B (tRNA methyltransferase 61B)

Identity

Alias_namestRNA methyltransferase 61 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ20628
Other alias-
HGNC (Hugo) TRMT61B
LocusID (NCBI) 55006
Atlas_Id 75202
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 28849821 and ends at 28870309 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NF1 (17q11.2) / TRMT61B (2p23.2)TRMT61B (2p23.2) / ALK (2p23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT61B   26070
Cards
Entrez_Gene (NCBI)TRMT61B  55006  tRNA methyltransferase 61B
Aliases
GeneCards (Weizmann)TRMT61B
Ensembl hg19 (Hinxton)ENSG00000171103 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171103 [Gene_View]  chr2:28849821-28870309 [Contig_View]  TRMT61B [Vega]
ICGC DataPortalENSG00000171103
TCGA cBioPortalTRMT61B
AceView (NCBI)TRMT61B
Genatlas (Paris)TRMT61B
WikiGenes55006
SOURCE (Princeton)TRMT61B
Genetics Home Reference (NIH)TRMT61B
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT61B  -     chr2:28849821-28870309 -  2p23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT61B  -     2p23.2   [Description]    (hg19-Feb_2009)
EnsemblTRMT61B - 2p23.2 [CytoView hg19]  TRMT61B - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBITRMT61B [Mapview hg19]  TRMT61B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK225524 AK225551 AL136689 BC000952 BC010365
RefSeq transcript (Entrez)NM_017910
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT61B
Cluster EST : UnigeneHs.468026 [ NCBI ]
CGAP (NCI)Hs.468026
Alternative Splicing GalleryENSG00000171103
Gene ExpressionTRMT61B [ NCBI-GEO ]   TRMT61B [ EBI - ARRAY_EXPRESS ]   TRMT61B [ SEEK ]   TRMT61B [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT61B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55006
GTEX Portal (Tissue expression)TRMT61B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVS5
Splice isoforms : SwissVarQ9BVS5
PhosPhoSitePlusQ9BVS5
Domaine pattern : Prosite (Expaxy)SAM_TRM61 (PS51620)   
Domains : Interpro (EBI)SAM-dependent_MTases    tRNA_MeTrfase_Gcd14   
Domain families : Pfam (Sanger)GCD14 (PF08704)   
Domain families : Pfam (NCBI)pfam08704   
Conserved Domain (NCBI)TRMT61B
DMDM Disease mutations55006
Blocks (Seattle)TRMT61B
PDB (SRS)2B25   
PDB (PDBSum)2B25   
PDB (IMB)2B25   
PDB (RSDB)2B25   
Structural Biology KnowledgeBase2B25   
SCOP (Structural Classification of Proteins)2B25   
CATH (Classification of proteins structures)2B25   
SuperfamilyQ9BVS5
Human Protein AtlasENSG00000171103
Peptide AtlasQ9BVS5
HPRD07935
IPIIPI00057035   IPI00894072   IPI00894472   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVS5
IntAct (EBI)Q9BVS5
FunCoupENSG00000171103
BioGRIDTRMT61B
STRING (EMBL)TRMT61B
ZODIACTRMT61B
Ontologies - Pathways
QuickGOQ9BVS5
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial matrix  tRNA (adenine-N1-)-methyltransferase activity  tRNA (adenine-N1-)-methyltransferase activity  rRNA (adenine) methyltransferase activity  rRNA methylation  tRNA (m1A) methyltransferase complex  protein homooligomerization  mitochondrial tRNA methylation  mitochondrial tRNA methylation  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial matrix  tRNA (adenine-N1-)-methyltransferase activity  tRNA (adenine-N1-)-methyltransferase activity  rRNA (adenine) methyltransferase activity  rRNA methylation  tRNA (m1A) methyltransferase complex  protein homooligomerization  mitochondrial tRNA methylation  mitochondrial tRNA methylation  
NDEx NetworkTRMT61B
Atlas of Cancer Signalling NetworkTRMT61B
Wikipedia pathwaysTRMT61B
Orthology - Evolution
OrthoDB55006
GeneTree (enSembl)ENSG00000171103
Phylogenetic Trees/Animal Genes : TreeFamTRMT61B
HOVERGENQ9BVS5
HOGENOMQ9BVS5
Homologs : HomoloGeneTRMT61B
Homology/Alignments : Family Browser (UCSC)TRMT61B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT61B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT61B
dbVarTRMT61B
ClinVarTRMT61B
1000_GenomesTRMT61B 
Exome Variant ServerTRMT61B
ExAC (Exome Aggregation Consortium)TRMT61B (select the gene name)
Genetic variants : HAPMAP55006
Genomic Variants (DGV)TRMT61B [DGVbeta]
DECIPHERTRMT61B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT61B 
Mutations
ICGC Data PortalTRMT61B 
TCGA Data PortalTRMT61B 
Broad Tumor PortalTRMT61B
OASIS PortalTRMT61B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT61B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRMT61B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT61B
DgiDB (Drug Gene Interaction Database)TRMT61B
DoCM (Curated mutations)TRMT61B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT61B (select a term)
intoGenTRMT61B
Cancer3DTRMT61B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRMT61B
Genetic Testing Registry TRMT61B
NextProtQ9BVS5 [Medical]
TSGene55006
GENETestsTRMT61B
Target ValidationTRMT61B
Huge Navigator TRMT61B [HugePedia]
snp3D : Map Gene to Disease55006
BioCentury BCIQTRMT61B
ClinGenTRMT61B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55006
Chemical/Pharm GKB GenePA164726796
Clinical trialTRMT61B
Miscellaneous
canSAR (ICR)TRMT61B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT61B
EVEXTRMT61B
GoPubMedTRMT61B
iHOPTRMT61B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.