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TRMT9B (tRNA methyltransferase 9B (putative))

Identity

Alias_namesC8orf79
KIAA1456
chromosome 8 open reading frame 79
KIAA1456
Alias_symbol (synonym)FLJ36980
TRM9L
hTRM9L
Other alias
HGNC (Hugo) TRMT9B
LocusID (NCBI) 57604
Atlas_Id 57265
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 12945674 and ends at 13029775 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRMT9B   26725
Cards
Entrez_Gene (NCBI)TRMT9B  57604  tRNA methyltransferase 9B (putative)
AliasesC8orf79; KIAA1456; TRM9L; hTRM9L
GeneCards (Weizmann)TRMT9B
Ensembl hg19 (Hinxton)ENSG00000250305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250305 [Gene_View]  ENSG00000250305 [Sequence]  chr8:12945674-13029775 [Contig_View]  TRMT9B [Vega]
ICGC DataPortalENSG00000250305
TCGA cBioPortalTRMT9B
AceView (NCBI)TRMT9B
Genatlas (Paris)TRMT9B
WikiGenes57604
SOURCE (Princeton)TRMT9B
Genetics Home Reference (NIH)TRMT9B
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT9B  -     chr8:12945674-13029775 +  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT9B  -     8p22   [Description]    (hg19-Feb_2009)
GoldenPathTRMT9B - 8p22 [CytoView hg19]  TRMT9B - 8p22 [CytoView hg38]
ImmunoBaseENSG00000250305
Mapping of homologs : NCBITRMT9B [Mapview hg19]  TRMT9B [Mapview hg38]
OMIM615666   
Gene and transcription
Genbank (Entrez)AB040889 AK094299 AK125638 AK296010 AK307825
RefSeq transcript (Entrez)NM_001099677 NM_020844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT9B
Cluster EST : UnigeneHs.202521 [ NCBI ]
CGAP (NCI)Hs.202521
Alternative Splicing GalleryENSG00000250305
Gene ExpressionTRMT9B [ NCBI-GEO ]   TRMT9B [ EBI - ARRAY_EXPRESS ]   TRMT9B [ SEEK ]   TRMT9B [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57604
GTEX Portal (Tissue expression)TRMT9B
Human Protein AtlasENSG00000250305-TRMT9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P272   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P272  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P272
Splice isoforms : SwissVarQ9P272
PhosPhoSitePlusQ9P272
Domains : Interpro (EBI)Methyltransf_11    SAM-dependent_MTases    Trm9   
Domain families : Pfam (Sanger)Methyltransf_11 (PF08241)   
Domain families : Pfam (NCBI)pfam08241   
Conserved Domain (NCBI)TRMT9B
DMDM Disease mutations57604
Blocks (Seattle)TRMT9B
SuperfamilyQ9P272
Human Protein Atlas [tissue]ENSG00000250305-TRMT9B [tissue]
Peptide AtlasQ9P272
IPIIPI00167751   IPI00292819   IPI01019047   
Protein Interaction databases
DIP (DOE-UCLA)Q9P272
IntAct (EBI)Q9P272
FunCoupENSG00000250305
BioGRIDTRMT9B
STRING (EMBL)TRMT9B
ZODIACTRMT9B
Ontologies - Pathways
QuickGOQ9P272
Ontology : AmiGOtRNA binding  tRNA wobble uridine modification  nucleus  cytoplasm  cytoplasm  tRNA modification  tRNA methyltransferase activity  tRNA (uracil) methyltransferase activity  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  tRNA methylation  oxidation-reduction process  
Ontology : EGO-EBItRNA binding  tRNA wobble uridine modification  nucleus  cytoplasm  cytoplasm  tRNA modification  tRNA methyltransferase activity  tRNA (uracil) methyltransferase activity  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  tRNA methylation  oxidation-reduction process  
NDEx NetworkTRMT9B
Atlas of Cancer Signalling NetworkTRMT9B
Wikipedia pathwaysTRMT9B
Orthology - Evolution
OrthoDB57604
GeneTree (enSembl)ENSG00000250305
Phylogenetic Trees/Animal Genes : TreeFamTRMT9B
HOGENOMQ9P272
Homologs : HomoloGeneTRMT9B
Homology/Alignments : Family Browser (UCSC)TRMT9B
Gene fusions - Rearrangements
Fusion : QuiverTRMT9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT9B
dbVarTRMT9B
ClinVarTRMT9B
1000_GenomesTRMT9B 
Exome Variant ServerTRMT9B
ExAC (Exome Aggregation Consortium)ENSG00000250305
GNOMAD BrowserENSG00000250305
Varsome BrowserTRMT9B
Genetic variants : HAPMAP57604
Genomic Variants (DGV)TRMT9B [DGVbeta]
DECIPHERTRMT9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT9B 
Mutations
ICGC Data PortalTRMT9B 
TCGA Data PortalTRMT9B 
Broad Tumor PortalTRMT9B
OASIS PortalTRMT9B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRMT9B
BioMutasearch TRMT9B
DgiDB (Drug Gene Interaction Database)TRMT9B
DoCM (Curated mutations)TRMT9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT9B (select a term)
intoGenTRMT9B
Cancer3DTRMT9B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615666   
Orphanet
DisGeNETTRMT9B
MedgenTRMT9B
Genetic Testing Registry TRMT9B
NextProtQ9P272 [Medical]
TSGene57604
GENETestsTRMT9B
Target ValidationTRMT9B
Huge Navigator TRMT9B [HugePedia]
snp3D : Map Gene to Disease57604
BioCentury BCIQTRMT9B
ClinGenTRMT9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57604
Chemical/Pharm GKB GenePA143485343
Clinical trialTRMT9B
Miscellaneous
canSAR (ICR)TRMT9B (select the gene name)
DataMed IndexTRMT9B
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT9B
EVEXTRMT9B
GoPubMedTRMT9B
iHOPTRMT9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:33:34 CEST 2019

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