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TRMT9B (tRNA methyltransferase 9B (putative))

Identity

Alias (NCBI)C8orf79
KIAA1456
TRM9L
hTRM9L
HGNC (Hugo) TRMT9B
HGNC Alias symbFLJ36980
TRM9L
hTRM9L
HGNC Previous nameC8orf79
 KIAA1456
HGNC Previous namechromosome 8 open reading frame 79
 KIAA1456
LocusID (NCBI) 57604
Atlas_Id 57265
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 12945673 and ends at 13029775 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TRMT9B   26725
Cards
Entrez_Gene (NCBI)TRMT9B    tRNA methyltransferase 9B (putative)
AliasesC8orf79; KIAA1456; TRM9L; hTRM9L
GeneCards (Weizmann)TRMT9B
Ensembl hg19 (Hinxton)ENSG00000250305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250305 [Gene_View]  ENSG00000250305 [Sequence]  chr8:12945673-13029775 [Contig_View]  TRMT9B [Vega]
ICGC DataPortalENSG00000250305
TCGA cBioPortalTRMT9B
AceView (NCBI)TRMT9B
Genatlas (Paris)TRMT9B
SOURCE (Princeton)TRMT9B
Genetics Home Reference (NIH)TRMT9B
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT9B  -     chr8:12945673-13029775 +  8p22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT9B  -     8p22   [Description]    (hg19-Feb_2009)
GoldenPathTRMT9B - 8p22 [CytoView hg19]  TRMT9B - 8p22 [CytoView hg38]
ImmunoBaseENSG00000250305
Genome Data Viewer NCBITRMT9B [Mapview hg19]  
OMIM615666   
Gene and transcription
Genbank (Entrez)AB040889 AK094299 AK125638 AK296010 AK307825
RefSeq transcript (Entrez)NM_001099677 NM_020844
Consensus coding sequences : CCDS (NCBI)TRMT9B
Gene ExpressionTRMT9B [ NCBI-GEO ]   TRMT9B [ EBI - ARRAY_EXPRESS ]   TRMT9B [ SEEK ]   TRMT9B [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT9B [ Firebrowse - Broad ]
GenevisibleExpression of TRMT9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57604
GTEX Portal (Tissue expression)TRMT9B
Human Protein AtlasENSG00000250305-TRMT9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P272   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P272  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P272
PhosPhoSitePlusQ9P272
Domains : Interpro (EBI)Methyltransf_11    SAM-dependent_MTases    Trm9   
Domain families : Pfam (Sanger)Methyltransf_11 (PF08241)   
Domain families : Pfam (NCBI)pfam08241   
Conserved Domain (NCBI)TRMT9B
SuperfamilyQ9P272
AlphaFold pdb e-kbQ9P272   
Human Protein Atlas [tissue]ENSG00000250305-TRMT9B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9P272
IntAct (EBI)Q9P272
BioGRIDTRMT9B
STRING (EMBL)TRMT9B
ZODIACTRMT9B
Ontologies - Pathways
QuickGOQ9P272
Ontology : AmiGOtRNA binding  tRNA wobble uridine modification  nucleus  cytoplasm  cytoplasm  tRNA modification  tRNA methyltransferase activity  tRNA (uracil) methyltransferase activity  tRNA methylation  
Ontology : EGO-EBItRNA binding  tRNA wobble uridine modification  nucleus  cytoplasm  cytoplasm  tRNA modification  tRNA methyltransferase activity  tRNA (uracil) methyltransferase activity  tRNA methylation  
NDEx NetworkTRMT9B
Atlas of Cancer Signalling NetworkTRMT9B
Wikipedia pathwaysTRMT9B
Orthology - Evolution
OrthoDB57604
GeneTree (enSembl)ENSG00000250305
Phylogenetic Trees/Animal Genes : TreeFamTRMT9B
Homologs : HomoloGeneTRMT9B
Homology/Alignments : Family Browser (UCSC)TRMT9B
Gene fusions - Rearrangements
Fusion : QuiverTRMT9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT9B
dbVarTRMT9B
ClinVarTRMT9B
MonarchTRMT9B
1000_GenomesTRMT9B 
Exome Variant ServerTRMT9B
GNOMAD BrowserENSG00000250305
Varsome BrowserTRMT9B
ACMGTRMT9B variants
VarityQ9P272
Genomic Variants (DGV)TRMT9B [DGVbeta]
DECIPHERTRMT9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT9B 
Mutations
ICGC Data PortalTRMT9B 
TCGA Data PortalTRMT9B 
Broad Tumor PortalTRMT9B
OASIS PortalTRMT9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMT9B
Mutations and Diseases : HGMDTRMT9B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRMT9B
DgiDB (Drug Gene Interaction Database)TRMT9B
DoCM (Curated mutations)TRMT9B
CIViC (Clinical Interpretations of Variants in Cancer)TRMT9B
Cancer3DTRMT9B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615666   
Orphanet
DisGeNETTRMT9B
MedgenTRMT9B
Genetic Testing Registry TRMT9B
NextProtQ9P272 [Medical]
GENETestsTRMT9B
Target ValidationTRMT9B
Huge Navigator TRMT9B [HugePedia]
ClinGenTRMT9B
Clinical trials, drugs, therapy
MyCancerGenomeTRMT9B
Protein Interactions : CTDTRMT9B
Pharm GKB GenePA143485343
PharosQ9P272
Clinical trialTRMT9B
Miscellaneous
canSAR (ICR)TRMT9B
HarmonizomeTRMT9B
DataMed IndexTRMT9B
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRMT9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:28 CEST 2021

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