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TRNAU1AP (tRNA selenocysteine 1 associated protein 1)

Identity

Alias_namesTRSPAP1
tRNA selenocysteine associated protein 1
Alias_symbol (synonym)SECP43
FLJ20503
Other aliasPRO1902
HGNC (Hugo) TRNAU1AP
LocusID (NCBI) 54952
Atlas_Id 42245
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28553017 and ends at 28578545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GMEB1 (1p35.3) / TRNAU1AP (1p35.3)KIF26B (1q44) / TRNAU1AP (1p35.3)RNF115 (1q21.1) / TRNAU1AP (1p35.3)
SPOP (17q21.33) / TRNAU1AP (1p35.3)TRNAU1AP (1p35.3) / PHACTR4 (1p35.3)TRNAU1AP (1p35.3) / RCC1 (1p35.3)
GMEB1 1p35.3 / TRNAU1AP 1p35.3TRNAU1AP 1p35.3 / PHACTR4 1p35.3TRNAU1AP 1p35.3 / RCC1 1p35.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRNAU1AP   30813
Cards
Entrez_Gene (NCBI)TRNAU1AP  54952  tRNA selenocysteine 1 associated protein 1
AliasesPRO1902; SECP43; TRSPAP1
GeneCards (Weizmann)TRNAU1AP
Ensembl hg19 (Hinxton)ENSG00000180098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180098 [Gene_View]  chr1:28553017-28578545 [Contig_View]  TRNAU1AP [Vega]
ICGC DataPortalENSG00000180098
TCGA cBioPortalTRNAU1AP
AceView (NCBI)TRNAU1AP
Genatlas (Paris)TRNAU1AP
WikiGenes54952
SOURCE (Princeton)TRNAU1AP
Genetics Home Reference (NIH)TRNAU1AP
Genomic and cartography
GoldenPath hg38 (UCSC)TRNAU1AP  -     chr1:28553017-28578545 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRNAU1AP  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblTRNAU1AP - 1p35.3 [CytoView hg19]  TRNAU1AP - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBITRNAU1AP [Mapview hg19]  TRNAU1AP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF118082 AK000510 AK023555 AK300162 AK309481
RefSeq transcript (Entrez)NM_017846
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRNAU1AP
Cluster EST : UnigeneHs.533626 [ NCBI ]
CGAP (NCI)Hs.533626
Alternative Splicing GalleryENSG00000180098
Gene ExpressionTRNAU1AP [ NCBI-GEO ]   TRNAU1AP [ EBI - ARRAY_EXPRESS ]   TRNAU1AP [ SEEK ]   TRNAU1AP [ MEM ]
Gene Expression Viewer (FireBrowse)TRNAU1AP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54952
GTEX Portal (Tissue expression)TRNAU1AP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX07
Splice isoforms : SwissVarQ9NX07
PhosPhoSitePlusQ9NX07
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)TRNAU1AP
DMDM Disease mutations54952
Blocks (Seattle)TRNAU1AP
PDB (SRS)2DHG    2DIV   
PDB (PDBSum)2DHG    2DIV   
PDB (IMB)2DHG    2DIV   
PDB (RSDB)2DHG    2DIV   
Structural Biology KnowledgeBase2DHG    2DIV   
SCOP (Structural Classification of Proteins)2DHG    2DIV   
CATH (Classification of proteins structures)2DHG    2DIV   
SuperfamilyQ9NX07
Human Protein AtlasENSG00000180098
Peptide AtlasQ9NX07
HPRD18035
Protein Interaction databases
DIP (DOE-UCLA)Q9NX07
IntAct (EBI)Q9NX07
FunCoupENSG00000180098
BioGRIDTRNAU1AP
STRING (EMBL)TRNAU1AP
ZODIACTRNAU1AP
Ontologies - Pathways
QuickGOQ9NX07
Ontology : AmiGOselenocysteine incorporation  RNA binding  nucleus  cytoplasm  
Ontology : EGO-EBIselenocysteine incorporation  RNA binding  nucleus  cytoplasm  
NDEx NetworkTRNAU1AP
Atlas of Cancer Signalling NetworkTRNAU1AP
Wikipedia pathwaysTRNAU1AP
Orthology - Evolution
OrthoDB54952
GeneTree (enSembl)ENSG00000180098
Phylogenetic Trees/Animal Genes : TreeFamTRNAU1AP
HOVERGENQ9NX07
HOGENOMQ9NX07
Homologs : HomoloGeneTRNAU1AP
Homology/Alignments : Family Browser (UCSC)TRNAU1AP
Gene fusions - Rearrangements
Fusion : MitelmanGMEB1/TRNAU1AP [1p35.3/1p35.3]  [t(1;1)(p35;p35)]  
Fusion : MitelmanTRNAU1AP/PHACTR4 [1p35.3/1p35.3]  [t(1;1)(p35;p35)]  
Fusion : MitelmanTRNAU1AP/RCC1 [1p35.3/1p35.3]  [t(1;1)(p35;p35)]  
Fusion: TCGAGMEB1 1p35.3 TRNAU1AP 1p35.3 OV
Fusion: TCGATRNAU1AP 1p35.3 PHACTR4 1p35.3 BRCA
Fusion: TCGATRNAU1AP 1p35.3 RCC1 1p35.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRNAU1AP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRNAU1AP
dbVarTRNAU1AP
ClinVarTRNAU1AP
1000_GenomesTRNAU1AP 
Exome Variant ServerTRNAU1AP
ExAC (Exome Aggregation Consortium)TRNAU1AP (select the gene name)
Genetic variants : HAPMAP54952
Genomic Variants (DGV)TRNAU1AP [DGVbeta]
DECIPHERTRNAU1AP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRNAU1AP 
Mutations
ICGC Data PortalTRNAU1AP 
TCGA Data PortalTRNAU1AP 
Broad Tumor PortalTRNAU1AP
OASIS PortalTRNAU1AP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRNAU1AP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRNAU1AP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRNAU1AP
DgiDB (Drug Gene Interaction Database)TRNAU1AP
DoCM (Curated mutations)TRNAU1AP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRNAU1AP (select a term)
intoGenTRNAU1AP
Cancer3DTRNAU1AP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRNAU1AP
Genetic Testing Registry TRNAU1AP
NextProtQ9NX07 [Medical]
TSGene54952
GENETestsTRNAU1AP
Huge Navigator TRNAU1AP [HugePedia]
snp3D : Map Gene to Disease54952
BioCentury BCIQTRNAU1AP
ClinGenTRNAU1AP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54952
Chemical/Pharm GKB GenePA164727240
Clinical trialTRNAU1AP
Miscellaneous
canSAR (ICR)TRNAU1AP (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRNAU1AP
EVEXTRNAU1AP
GoPubMedTRNAU1AP
iHOPTRNAU1AP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:21 CEST 2017

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