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TRNP1 (TMF1-regulated nuclear protein 1)

Identity

Alias_namesC1orf225
chromosome 1 open reading frame 225
Alias_symbol (synonym)LOC388610
Other aliasTNRP
HGNC (Hugo) TRNP1
LocusID (NCBI) 388610
Atlas_Id 56090
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26993704 and ends at 27000886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRNP1   34348
Cards
Entrez_Gene (NCBI)TRNP1  388610  TMF1-regulated nuclear protein 1
AliasesC1orf225; TNRP
GeneCards (Weizmann)TRNP1
Ensembl hg19 (Hinxton)ENSG00000253368 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253368 [Gene_View]  chr1:26993704-27000886 [Contig_View]  TRNP1 [Vega]
ICGC DataPortalENSG00000253368
TCGA cBioPortalTRNP1
AceView (NCBI)TRNP1
Genatlas (Paris)TRNP1
WikiGenes388610
SOURCE (Princeton)TRNP1
Genetics Home Reference (NIH)TRNP1
Genomic and cartography
GoldenPath hg38 (UCSC)TRNP1  -     chr1:26993704-27000886 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRNP1  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblTRNP1 - 1p36.11 [CytoView hg19]  TRNP1 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBITRNP1 [Mapview hg19]  TRNP1 [Mapview hg38]
OMIM616824   
Gene and transcription
Genbank (Entrez)AI366714 BC069216 CK904126
RefSeq transcript (Entrez)NM_001013642
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRNP1
Cluster EST : UnigeneHs.355747 [ NCBI ]
CGAP (NCI)Hs.355747
Alternative Splicing GalleryENSG00000253368
Gene ExpressionTRNP1 [ NCBI-GEO ]   TRNP1 [ EBI - ARRAY_EXPRESS ]   TRNP1 [ SEEK ]   TRNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRNP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388610
GTEX Portal (Tissue expression)TRNP1
Human Protein AtlasENSG00000253368-TRNP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NT89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NT89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NT89
Splice isoforms : SwissVarQ6NT89
PhosPhoSitePlusQ6NT89
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRNP1
DMDM Disease mutations388610
Blocks (Seattle)TRNP1
SuperfamilyQ6NT89
Human Protein Atlas [tissue]ENSG00000253368-TRNP1 [tissue]
Peptide AtlasQ6NT89
HPRD18384
IPIIPI00419562   IPI00984024   
Protein Interaction databases
DIP (DOE-UCLA)Q6NT89
IntAct (EBI)Q6NT89
FunCoupENSG00000253368
BioGRIDTRNP1
STRING (EMBL)TRNP1
ZODIACTRNP1
Ontologies - Pathways
QuickGOQ6NT89
Ontology : AmiGODNA binding  nucleus  nucleus  nuclear euchromatin  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  cerebellar cortex morphogenesis  regulation of cell proliferation  regulation of cell cycle  neural precursor cell proliferation  
Ontology : EGO-EBIDNA binding  nucleus  nucleus  nuclear euchromatin  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  cerebellar cortex morphogenesis  regulation of cell proliferation  regulation of cell cycle  neural precursor cell proliferation  
NDEx NetworkTRNP1
Atlas of Cancer Signalling NetworkTRNP1
Wikipedia pathwaysTRNP1
Orthology - Evolution
OrthoDB388610
GeneTree (enSembl)ENSG00000253368
Phylogenetic Trees/Animal Genes : TreeFamTRNP1
HOVERGENQ6NT89
HOGENOMQ6NT89
Homologs : HomoloGeneTRNP1
Homology/Alignments : Family Browser (UCSC)TRNP1
Gene fusions - Rearrangements
Fusion: Tumor Portal TRNP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRNP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRNP1
dbVarTRNP1
ClinVarTRNP1
1000_GenomesTRNP1 
Exome Variant ServerTRNP1
ExAC (Exome Aggregation Consortium)ENSG00000253368
GNOMAD BrowserENSG00000253368
Genetic variants : HAPMAP388610
Genomic Variants (DGV)TRNP1 [DGVbeta]
DECIPHERTRNP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRNP1 
Mutations
ICGC Data PortalTRNP1 
TCGA Data PortalTRNP1 
Broad Tumor PortalTRNP1
OASIS PortalTRNP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRNP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRNP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRNP1
DgiDB (Drug Gene Interaction Database)TRNP1
DoCM (Curated mutations)TRNP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRNP1 (select a term)
intoGenTRNP1
Cancer3DTRNP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616824   
Orphanet
MedgenTRNP1
Genetic Testing Registry TRNP1
NextProtQ6NT89 [Medical]
TSGene388610
GENETestsTRNP1
Target ValidationTRNP1
Huge Navigator TRNP1 [HugePedia]
snp3D : Map Gene to Disease388610
BioCentury BCIQTRNP1
ClinGenTRNP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388610
Chemical/Pharm GKB GenePA164727311
Clinical trialTRNP1
Miscellaneous
canSAR (ICR)TRNP1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRNP1
EVEXTRNP1
GoPubMedTRNP1
iHOPTRNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:15:48 CET 2017

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