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TRNP1 (TMF1 regulated nuclear protein 1)

Identity

Alias (NCBI)C1orf225
TNRP
TRNP
HGNC (Hugo) TRNP1
HGNC Alias symbTRNP
HGNC Previous nameC1orf225
HGNC Previous namechromosome 1 open reading frame 225
LocusID (NCBI) 388610
Atlas_Id 56090
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26993692 and ends at 27000886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRNP1   34348
Cards
Entrez_Gene (NCBI)TRNP1    TMF1 regulated nuclear protein 1
AliasesC1orf225; TNRP; TRNP
GeneCards (Weizmann)TRNP1
Ensembl hg19 (Hinxton)ENSG00000253368 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253368 [Gene_View]  ENSG00000253368 [Sequence]  chr1:26993692-27000886 [Contig_View]  TRNP1 [Vega]
ICGC DataPortalENSG00000253368
TCGA cBioPortalTRNP1
AceView (NCBI)TRNP1
Genatlas (Paris)TRNP1
SOURCE (Princeton)TRNP1
Genetics Home Reference (NIH)TRNP1
Genomic and cartography
GoldenPath hg38 (UCSC)TRNP1  -     chr1:26993692-27000886 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRNP1  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathTRNP1 - 1p36.11 [CytoView hg19]  TRNP1 - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000253368
Genome Data Viewer NCBITRNP1 [Mapview hg19]  
OMIM616824   
Gene and transcription
Genbank (Entrez)AI366714 BC069216 CK904126
RefSeq transcript (Entrez)NM_001013642
Consensus coding sequences : CCDS (NCBI)TRNP1
Gene ExpressionTRNP1 [ NCBI-GEO ]   TRNP1 [ EBI - ARRAY_EXPRESS ]   TRNP1 [ SEEK ]   TRNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRNP1 [ Firebrowse - Broad ]
GenevisibleExpression of TRNP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388610
GTEX Portal (Tissue expression)TRNP1
Human Protein AtlasENSG00000253368-TRNP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NT89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NT89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NT89
PhosPhoSitePlusQ6NT89
Domains : Interpro (EBI)TRNP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRNP1
SuperfamilyQ6NT89
AlphaFold pdb e-kbQ6NT89   
Human Protein Atlas [tissue]ENSG00000253368-TRNP1 [tissue]
HPRD18384
Protein Interaction databases
DIP (DOE-UCLA)Q6NT89
IntAct (EBI)Q6NT89
BioGRIDTRNP1
STRING (EMBL)TRNP1
ZODIACTRNP1
Ontologies - Pathways
QuickGOQ6NT89
Ontology : AmiGOeuchromatin  DNA binding  nucleus  nucleus  cell cycle  cerebellar cortex morphogenesis  regulation of cell population proliferation  regulation of cell cycle  neural precursor cell proliferation  
Ontology : EGO-EBIeuchromatin  DNA binding  nucleus  nucleus  cell cycle  cerebellar cortex morphogenesis  regulation of cell population proliferation  regulation of cell cycle  neural precursor cell proliferation  
NDEx NetworkTRNP1
Atlas of Cancer Signalling NetworkTRNP1
Wikipedia pathwaysTRNP1
Orthology - Evolution
OrthoDB388610
GeneTree (enSembl)ENSG00000253368
Phylogenetic Trees/Animal Genes : TreeFamTRNP1
Homologs : HomoloGeneTRNP1
Homology/Alignments : Family Browser (UCSC)TRNP1
Gene fusions - Rearrangements
Fusion : QuiverTRNP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRNP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRNP1
dbVarTRNP1
ClinVarTRNP1
MonarchTRNP1
1000_GenomesTRNP1 
Exome Variant ServerTRNP1
GNOMAD BrowserENSG00000253368
Varsome BrowserTRNP1
ACMGTRNP1 variants
VarityQ6NT89
Genomic Variants (DGV)TRNP1 [DGVbeta]
DECIPHERTRNP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRNP1 
Mutations
ICGC Data PortalTRNP1 
TCGA Data PortalTRNP1 
Broad Tumor PortalTRNP1
OASIS PortalTRNP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRNP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRNP1
Mutations and Diseases : HGMDTRNP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRNP1
DgiDB (Drug Gene Interaction Database)TRNP1
DoCM (Curated mutations)TRNP1
CIViC (Clinical Interpretations of Variants in Cancer)TRNP1
Cancer3DTRNP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616824   
Orphanet
DisGeNETTRNP1
MedgenTRNP1
Genetic Testing Registry TRNP1
NextProtQ6NT89 [Medical]
GENETestsTRNP1
Target ValidationTRNP1
Huge Navigator TRNP1 [HugePedia]
ClinGenTRNP1
Clinical trials, drugs, therapy
MyCancerGenomeTRNP1
Protein Interactions : CTDTRNP1
Pharm GKB GenePA164727311
PharosQ6NT89
Clinical trialTRNP1
Miscellaneous
canSAR (ICR)TRNP1
HarmonizomeTRNP1
DataMed IndexTRNP1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:29 CEST 2021

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