Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRNT1 (tRNA nucleotidyl transferase 1)

Identity

Alias (NCBI)CCA1
CGI-47
MtCCA
RPEM
SIFD
HGNC (Hugo) TRNT1
HGNC Alias symbMtCCA
CGI-47
CCA1
HGNC Alias nameATP(CTP):tRNA nucleotidyltransferase
 CCA-adding enzyme
HGNC Previous nametRNA nucleotidyl transferase, CCA-adding, 1
 tRNA CCA nucleotidyl transferase 1
LocusID (NCBI) 51095
Atlas_Id 58353
Location 3p26.2  [Link to chromosome band 3p26]
Location_base_pair Starts at 3126940 and ends at 3149022 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRNT1 (3p26.2) / CNTN4 (3p26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRNT1   17341
Cards
Entrez_Gene (NCBI)TRNT1    tRNA nucleotidyl transferase 1
AliasesCCA1; CGI-47; MtCCA; RPEM; 
SIFD
GeneCards (Weizmann)TRNT1
Ensembl hg19 (Hinxton)ENSG00000072756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000072756 [Gene_View]  ENSG00000072756 [Sequence]  chr3:3126940-3149022 [Contig_View]  TRNT1 [Vega]
ICGC DataPortalENSG00000072756
TCGA cBioPortalTRNT1
AceView (NCBI)TRNT1
Genatlas (Paris)TRNT1
SOURCE (Princeton)TRNT1
Genetics Home Reference (NIH)TRNT1
Genomic and cartography
GoldenPath hg38 (UCSC)TRNT1  -     chr3:3126940-3149022 +  3p26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRNT1  -     3p26.2   [Description]    (hg19-Feb_2009)
GoldenPathTRNT1 - 3p26.2 [CytoView hg19]  TRNT1 - 3p26.2 [CytoView hg38]
ImmunoBaseENSG00000072756
Genome Data Viewer NCBITRNT1 [Mapview hg19]  
OMIM612907   616084   616959   
Gene and transcription
Genbank (Entrez)AB063105 AF151805 AK124137 AK290411 AL834397
RefSeq transcript (Entrez)NM_001302946 NM_001367321 NM_001367322 NM_001367323 NM_016000 NM_182916
Consensus coding sequences : CCDS (NCBI)TRNT1
Gene ExpressionTRNT1 [ NCBI-GEO ]   TRNT1 [ EBI - ARRAY_EXPRESS ]   TRNT1 [ SEEK ]   TRNT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRNT1 [ Firebrowse - Broad ]
GenevisibleExpression of TRNT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51095
GTEX Portal (Tissue expression)TRNT1
Human Protein AtlasENSG00000072756-TRNT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q11
PhosPhoSitePlusQ96Q11
Domains : Interpro (EBI)NT_sf    PolA_pol_head_dom    PolyA_RNA-bd   
Domain families : Pfam (Sanger)PolyA_pol (PF01743)    PolyA_pol_RNAbd (PF12627)   
Domain families : Pfam (NCBI)pfam01743    pfam12627   
Conserved Domain (NCBI)TRNT1
PDB (RSDB)1OU5    4X4W   
PDB Europe1OU5    4X4W   
PDB (PDBSum)1OU5    4X4W   
PDB (IMB)1OU5    4X4W   
Structural Biology KnowledgeBase1OU5    4X4W   
SCOP (Structural Classification of Proteins)1OU5    4X4W   
CATH (Classification of proteins structures)1OU5    4X4W   
SuperfamilyQ96Q11
AlphaFold pdb e-kbQ96Q11   
Human Protein Atlas [tissue]ENSG00000072756-TRNT1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96Q11
IntAct (EBI)Q96Q11
BioGRIDTRNT1
STRING (EMBL)TRNT1
ZODIACTRNT1
Ontologies - Pathways
QuickGOQ96Q11
Ontology : AmiGOtRNA binding  tRNA 3'-terminal CCA addition  ATP binding  nucleoplasm  mitochondrion  mitochondrial matrix  tRNA cytidylyltransferase activity  tRNA 3'-end processing  CTP:tRNA cytidylyltransferase activity  CTP:3'-cytidine-tRNA cytidylyltransferase activity  ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity  mitochondrial tRNA 3'-end processing  mitochondrial tRNA 3'-end processing  
Ontology : EGO-EBItRNA binding  tRNA 3'-terminal CCA addition  ATP binding  nucleoplasm  mitochondrion  mitochondrial matrix  tRNA cytidylyltransferase activity  tRNA 3'-end processing  CTP:tRNA cytidylyltransferase activity  CTP:3'-cytidine-tRNA cytidylyltransferase activity  ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity  mitochondrial tRNA 3'-end processing  mitochondrial tRNA 3'-end processing  
Pathways : KEGGRNA transport   
NDEx NetworkTRNT1
Atlas of Cancer Signalling NetworkTRNT1
Wikipedia pathwaysTRNT1
Orthology - Evolution
OrthoDB51095
GeneTree (enSembl)ENSG00000072756
Phylogenetic Trees/Animal Genes : TreeFamTRNT1
Homologs : HomoloGeneTRNT1
Homology/Alignments : Family Browser (UCSC)TRNT1
Gene fusions - Rearrangements
Fusion : QuiverTRNT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRNT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRNT1
dbVarTRNT1
ClinVarTRNT1
MonarchTRNT1
1000_GenomesTRNT1 
Exome Variant ServerTRNT1
GNOMAD BrowserENSG00000072756
Varsome BrowserTRNT1
ACMGTRNT1 variants
VarityQ96Q11
Genomic Variants (DGV)TRNT1 [DGVbeta]
DECIPHERTRNT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRNT1 
Mutations
ICGC Data PortalTRNT1 
TCGA Data PortalTRNT1 
Broad Tumor PortalTRNT1
OASIS PortalTRNT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRNT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRNT1
Mutations and Diseases : HGMDTRNT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRNT1
DgiDB (Drug Gene Interaction Database)TRNT1
DoCM (Curated mutations)TRNT1
CIViC (Clinical Interpretations of Variants in Cancer)TRNT1
Cancer3DTRNT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612907    616084    616959   
Orphanet
DisGeNETTRNT1
MedgenTRNT1
Genetic Testing Registry TRNT1
NextProtQ96Q11 [Medical]
GENETestsTRNT1
Target ValidationTRNT1
Huge Navigator TRNT1 [HugePedia]
ClinGenTRNT1
Clinical trials, drugs, therapy
MyCancerGenomeTRNT1
Protein Interactions : CTDTRNT1
PharosQ96Q11
Clinical trialTRNT1
Miscellaneous
canSAR (ICR)TRNT1
HarmonizomeTRNT1
DataMed IndexTRNT1
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRNT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:29 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.