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TRNT1 (tRNA nucleotidyl transferase 1)

Identity

Alias_namestRNA nucleotidyl transferase, CCA-adding, 1
tRNA CCA nucleotidyl transferase 1
Alias_symbol (synonym)MtCCA
CGI-47
CCA1
Other aliasRPEM
SIFD
HGNC (Hugo) TRNT1
LocusID (NCBI) 51095
Atlas_Id 75205
Location 3p26.2  [Link to chromosome band 3p26]
Location_base_pair Starts at 3126916 and ends at 3149022 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRNT1 (3p26.2) / CNTN4 (3p26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRNT1   17341
Cards
Entrez_Gene (NCBI)TRNT1  51095  tRNA nucleotidyl transferase 1
AliasesCCA1; CGI-47; MtCCA; RPEM; 
SIFD
GeneCards (Weizmann)TRNT1
Ensembl hg19 (Hinxton)ENSG00000072756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000072756 [Gene_View]  chr3:3126916-3149022 [Contig_View]  TRNT1 [Vega]
ICGC DataPortalENSG00000072756
TCGA cBioPortalTRNT1
AceView (NCBI)TRNT1
Genatlas (Paris)TRNT1
WikiGenes51095
SOURCE (Princeton)TRNT1
Genetics Home Reference (NIH)TRNT1
Genomic and cartography
GoldenPath hg38 (UCSC)TRNT1  -     chr3:3126916-3149022 +  3p26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRNT1  -     3p26.2   [Description]    (hg19-Feb_2009)
EnsemblTRNT1 - 3p26.2 [CytoView hg19]  TRNT1 - 3p26.2 [CytoView hg38]
Mapping of homologs : NCBITRNT1 [Mapview hg19]  TRNT1 [Mapview hg38]
OMIM612907   616084   616959   
Gene and transcription
Genbank (Entrez)AB063105 AF151805 AK124137 AK290411 AL834397
RefSeq transcript (Entrez)NM_001302946 NM_016000 NM_182916
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRNT1
Cluster EST : UnigeneHs.732725 [ NCBI ]
CGAP (NCI)Hs.732725
Alternative Splicing GalleryENSG00000072756
Gene ExpressionTRNT1 [ NCBI-GEO ]   TRNT1 [ EBI - ARRAY_EXPRESS ]   TRNT1 [ SEEK ]   TRNT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRNT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51095
GTEX Portal (Tissue expression)TRNT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q11
Splice isoforms : SwissVarQ96Q11
PhosPhoSitePlusQ96Q11
Domains : Interpro (EBI)PolA_pol_head_dom    PolyA_RNA-bd   
Domain families : Pfam (Sanger)PolyA_pol (PF01743)    PolyA_pol_RNAbd (PF12627)   
Domain families : Pfam (NCBI)pfam01743    pfam12627   
Conserved Domain (NCBI)TRNT1
DMDM Disease mutations51095
Blocks (Seattle)TRNT1
PDB (SRS)1OU5    4X4W   
PDB (PDBSum)1OU5    4X4W   
PDB (IMB)1OU5    4X4W   
PDB (RSDB)1OU5    4X4W   
Structural Biology KnowledgeBase1OU5    4X4W   
SCOP (Structural Classification of Proteins)1OU5    4X4W   
CATH (Classification of proteins structures)1OU5    4X4W   
SuperfamilyQ96Q11
Human Protein AtlasENSG00000072756
Peptide AtlasQ96Q11
HPRD18227
IPIIPI00289807   IPI00301719   IPI00305221   IPI00927685   IPI00925330   
Protein Interaction databases
DIP (DOE-UCLA)Q96Q11
IntAct (EBI)Q96Q11
FunCoupENSG00000072756
BioGRIDTRNT1
STRING (EMBL)TRNT1
ZODIACTRNT1
Ontologies - Pathways
QuickGOQ96Q11
Ontology : AmiGOtRNA binding  tRNA 3'-terminal CCA addition  tRNA adenylyltransferase activity  ATP binding  intracellular  nucleoplasm  mitochondrion  mitochondrial matrix  protein targeting to mitochondrion  5'-3' RNA polymerase activity  tRNA 3'-end processing  tRNA 3'-end processing  CTP:tRNA cytidylyltransferase activity  CTP:3'-cytidine-tRNA cytidylyltransferase activity  ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity  mitochondrial tRNA 3'-end processing  
Ontology : EGO-EBItRNA binding  tRNA 3'-terminal CCA addition  tRNA adenylyltransferase activity  ATP binding  intracellular  nucleoplasm  mitochondrion  mitochondrial matrix  protein targeting to mitochondrion  5'-3' RNA polymerase activity  tRNA 3'-end processing  tRNA 3'-end processing  CTP:tRNA cytidylyltransferase activity  CTP:3'-cytidine-tRNA cytidylyltransferase activity  ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity  mitochondrial tRNA 3'-end processing  
Pathways : KEGGRNA transport   
NDEx NetworkTRNT1
Atlas of Cancer Signalling NetworkTRNT1
Wikipedia pathwaysTRNT1
Orthology - Evolution
OrthoDB51095
GeneTree (enSembl)ENSG00000072756
Phylogenetic Trees/Animal Genes : TreeFamTRNT1
HOVERGENQ96Q11
HOGENOMQ96Q11
Homologs : HomoloGeneTRNT1
Homology/Alignments : Family Browser (UCSC)TRNT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRNT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRNT1
dbVarTRNT1
ClinVarTRNT1
1000_GenomesTRNT1 
Exome Variant ServerTRNT1
ExAC (Exome Aggregation Consortium)TRNT1 (select the gene name)
Genetic variants : HAPMAP51095
Genomic Variants (DGV)TRNT1 [DGVbeta]
DECIPHERTRNT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRNT1 
Mutations
ICGC Data PortalTRNT1 
TCGA Data PortalTRNT1 
Broad Tumor PortalTRNT1
OASIS PortalTRNT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRNT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRNT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TRNT1
DgiDB (Drug Gene Interaction Database)TRNT1
DoCM (Curated mutations)TRNT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRNT1 (select a term)
intoGenTRNT1
Cancer3DTRNT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612907    616084    616959   
Orphanet22438   
MedgenTRNT1
Genetic Testing Registry TRNT1
NextProtQ96Q11 [Medical]
TSGene51095
GENETestsTRNT1
Target ValidationTRNT1
Huge Navigator TRNT1 [HugePedia]
snp3D : Map Gene to Disease51095
BioCentury BCIQTRNT1
ClinGenTRNT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51095
Chemical/Pharm GKB GenePA38446
Clinical trialTRNT1
Miscellaneous
canSAR (ICR)TRNT1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRNT1
EVEXTRNT1
GoPubMedTRNT1
iHOPTRNT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:16 CEST 2017

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