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TROAP (trophinin associated protein)

Identity

Alias (NCBI)TASTIN
HGNC (Hugo) TROAP
HGNC Alias symbTASTIN
HGNC Alias nametastin
LocusID (NCBI) 10024
Atlas_Id 57747
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49323255 and ends at 49331731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TROAP (12q13.12) / TROAP (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TROAP   12327
Cards
Entrez_Gene (NCBI)TROAP    trophinin associated protein
AliasesTASTIN
GeneCards (Weizmann)TROAP
Ensembl hg19 (Hinxton)ENSG00000135451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135451 [Gene_View]  ENSG00000135451 [Sequence]  chr12:49323255-49331731 [Contig_View]  TROAP [Vega]
ICGC DataPortalENSG00000135451
TCGA cBioPortalTROAP
AceView (NCBI)TROAP
Genatlas (Paris)TROAP
SOURCE (Princeton)TROAP
Genetics Home Reference (NIH)TROAP
Genomic and cartography
GoldenPath hg38 (UCSC)TROAP  -     chr12:49323255-49331731 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TROAP  -     12q13.12   [Description]    (hg19-Feb_2009)
GoldenPathTROAP - 12q13.12 [CytoView hg19]  TROAP - 12q13.12 [CytoView hg38]
ImmunoBaseENSG00000135451
Genome Data Viewer NCBITROAP [Mapview hg19]  
OMIM603872   
Gene and transcription
Genbank (Entrez)AK296811 AK299302 AK309716 AK310709 AK315211
RefSeq transcript (Entrez)NM_001100620 NM_001278324 NM_005480
Consensus coding sequences : CCDS (NCBI)TROAP
Gene ExpressionTROAP [ NCBI-GEO ]   TROAP [ EBI - ARRAY_EXPRESS ]   TROAP [ SEEK ]   TROAP [ MEM ]
Gene Expression Viewer (FireBrowse)TROAP [ Firebrowse - Broad ]
GenevisibleExpression of TROAP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10024
GTEX Portal (Tissue expression)TROAP
Human Protein AtlasENSG00000135451-TROAP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12815   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12815  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12815
PhosPhoSitePlusQ12815
Domains : Interpro (EBI)Tastin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TROAP
SuperfamilyQ12815
AlphaFold pdb e-kbQ12815   
Human Protein Atlas [tissue]ENSG00000135451-TROAP [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q12815
IntAct (EBI)Q12815
BioGRIDTROAP
STRING (EMBL)TROAP
ZODIACTROAP
Ontologies - Pathways
QuickGOQ12815
Ontology : AmiGOprotein binding  cytoplasm  cell adhesion  
Ontology : EGO-EBIprotein binding  cytoplasm  cell adhesion  
NDEx NetworkTROAP
Atlas of Cancer Signalling NetworkTROAP
Wikipedia pathwaysTROAP
Orthology - Evolution
OrthoDB10024
GeneTree (enSembl)ENSG00000135451
Phylogenetic Trees/Animal Genes : TreeFamTROAP
Homologs : HomoloGeneTROAP
Homology/Alignments : Family Browser (UCSC)TROAP
Gene fusions - Rearrangements
Fusion : QuiverTROAP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTROAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TROAP
dbVarTROAP
ClinVarTROAP
MonarchTROAP
1000_GenomesTROAP 
Exome Variant ServerTROAP
GNOMAD BrowserENSG00000135451
Varsome BrowserTROAP
ACMGTROAP variants
VarityQ12815
Genomic Variants (DGV)TROAP [DGVbeta]
DECIPHERTROAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTROAP 
Mutations
ICGC Data PortalTROAP 
TCGA Data PortalTROAP 
Broad Tumor PortalTROAP
OASIS PortalTROAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTROAP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTROAP
Mutations and Diseases : HGMDTROAP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTROAP
DgiDB (Drug Gene Interaction Database)TROAP
DoCM (Curated mutations)TROAP
CIViC (Clinical Interpretations of Variants in Cancer)TROAP
Cancer3DTROAP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603872   
Orphanet
DisGeNETTROAP
MedgenTROAP
Genetic Testing Registry TROAP
NextProtQ12815 [Medical]
GENETestsTROAP
Target ValidationTROAP
Huge Navigator TROAP [HugePedia]
ClinGenTROAP
Clinical trials, drugs, therapy
MyCancerGenomeTROAP
Protein Interactions : CTDTROAP
Pharm GKB GenePA37003
PharosQ12815
Clinical trialTROAP
Miscellaneous
canSAR (ICR)TROAP
HarmonizomeTROAP
DataMed IndexTROAP
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTROAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:29 CEST 2021

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