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TROAP (trophinin associated protein)

Identity

Alias_symbol (synonym)TASTIN
Other alias
HGNC (Hugo) TROAP
LocusID (NCBI) 10024
Atlas_Id 75206
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49716971 and ends at 49718171 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TROAP (12q13.12) / TROAP (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TROAP   12327
Cards
Entrez_Gene (NCBI)TROAP  10024  trophinin associated protein
AliasesTASTIN
GeneCards (Weizmann)TROAP
Ensembl hg19 (Hinxton)ENSG00000135451 [Gene_View]  chr12:49716971-49718171 [Contig_View]  TROAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000135451 [Gene_View]  chr12:49716971-49718171 [Contig_View]  TROAP [Vega]
ICGC DataPortalENSG00000135451
TCGA cBioPortalTROAP
AceView (NCBI)TROAP
Genatlas (Paris)TROAP
WikiGenes10024
SOURCE (Princeton)TROAP
Genetics Home Reference (NIH)TROAP
Genomic and cartography
GoldenPath hg19 (UCSC)TROAP  -     chr12:49716971-49718171 +  12q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TROAP  -     12q13.12   [Description]    (hg38-Dec_2013)
EnsemblTROAP - 12q13.12 [CytoView hg19]  TROAP - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBITROAP [Mapview hg19]  TROAP [Mapview hg38]
OMIM603872   
Gene and transcription
Genbank (Entrez)AK296811 AK299302 AK309716 AK310709 AK315211
RefSeq transcript (Entrez)NM_001100620 NM_001278324 NM_005480
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)TROAP
Cluster EST : UnigeneHs.524399 [ NCBI ]
CGAP (NCI)Hs.524399
Alternative Splicing GalleryENSG00000135451
Gene ExpressionTROAP [ NCBI-GEO ]   TROAP [ EBI - ARRAY_EXPRESS ]   TROAP [ SEEK ]   TROAP [ MEM ]
Gene Expression Viewer (FireBrowse)TROAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10024
GTEX Portal (Tissue expression)TROAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12815   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12815  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12815
Splice isoforms : SwissVarQ12815
PhosPhoSitePlusQ12815
Domains : Interpro (EBI)Tastin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TROAP
DMDM Disease mutations10024
Blocks (Seattle)TROAP
SuperfamilyQ12815
Human Protein AtlasENSG00000135451
Peptide AtlasQ12815
HPRD04849
IPIIPI00029680   IPI00908812   IPI01021201   IPI01020676   IPI01021384   IPI01021528   IPI01021081   IPI01021969   IPI01022102   IPI01021648   IPI01021783   IPI01022544   IPI01022685   IPI00922215   IPI00449144   
Protein Interaction databases
DIP (DOE-UCLA)Q12815
IntAct (EBI)Q12815
FunCoupENSG00000135451
BioGRIDTROAP
STRING (EMBL)TROAP
ZODIACTROAP
Ontologies - Pathways
QuickGOQ12815
Ontology : AmiGOprotein binding  cytoplasm  cell adhesion  
Ontology : EGO-EBIprotein binding  cytoplasm  cell adhesion  
NDEx NetworkTROAP
Atlas of Cancer Signalling NetworkTROAP
Wikipedia pathwaysTROAP
Orthology - Evolution
OrthoDB10024
GeneTree (enSembl)ENSG00000135451
Phylogenetic Trees/Animal Genes : TreeFamTROAP
HOVERGENQ12815
HOGENOMQ12815
Homologs : HomoloGeneTROAP
Homology/Alignments : Family Browser (UCSC)TROAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTROAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TROAP
dbVarTROAP
ClinVarTROAP
1000_GenomesTROAP 
Exome Variant ServerTROAP
ExAC (Exome Aggregation Consortium)TROAP (select the gene name)
Genetic variants : HAPMAP10024
Genomic Variants (DGV)TROAP [DGVbeta]
DECIPHER (Syndromes)12:49716971-49718171  ENSG00000135451
CONAN: Copy Number AnalysisTROAP 
Mutations
ICGC Data PortalTROAP 
TCGA Data PortalTROAP 
Broad Tumor PortalTROAP
OASIS PortalTROAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTROAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTROAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TROAP
DgiDB (Drug Gene Interaction Database)TROAP
DoCM (Curated mutations)TROAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TROAP (select a term)
intoGenTROAP
Cancer3DTROAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603872   
Orphanet
MedgenTROAP
Genetic Testing Registry TROAP
NextProtQ12815 [Medical]
TSGene10024
GENETestsTROAP
Huge Navigator TROAP [HugePedia]
snp3D : Map Gene to Disease10024
BioCentury BCIQTROAP
ClinGenTROAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10024
Chemical/Pharm GKB GenePA37003
Clinical trialTROAP
Miscellaneous
canSAR (ICR)TROAP (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTROAP
EVEXTROAP
GoPubMedTROAP
iHOPTROAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:53 CET 2017

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