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TRPC1 (transient receptor potential cation channel subfamily C member 1)

Identity

Alias_namestransient receptor potential cation channel, subfamily C, member 1
Alias_symbol (synonym)HTRP-1
Other aliasTRP1
HGNC (Hugo) TRPC1
LocusID (NCBI) 7220
Atlas_Id 43870
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 142724424 and ends at 142807887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRPC1 (3q23) / PTPRG (3p14.2)TRPC1 3q23 / PTPRG 3p14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0303p14q23ID105776


External links

Nomenclature
HGNC (Hugo)TRPC1   12333
Cards
Entrez_Gene (NCBI)TRPC1  7220  transient receptor potential cation channel subfamily C member 1
AliasesHTRP-1; TRP1
GeneCards (Weizmann)TRPC1
Ensembl hg19 (Hinxton)ENSG00000144935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144935 [Gene_View]  ENSG00000144935 [Sequence]  chr3:142724424-142807887 [Contig_View]  TRPC1 [Vega]
ICGC DataPortalENSG00000144935
TCGA cBioPortalTRPC1
AceView (NCBI)TRPC1
Genatlas (Paris)TRPC1
WikiGenes7220
SOURCE (Princeton)TRPC1
Genetics Home Reference (NIH)TRPC1
Genomic and cartography
GoldenPath hg38 (UCSC)TRPC1  -     chr3:142724424-142807887 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPC1  -     3q23   [Description]    (hg19-Feb_2009)
GoldenPathTRPC1 - 3q23 [CytoView hg19]  TRPC1 - 3q23 [CytoView hg38]
ImmunoBaseENSG00000144935
Mapping of homologs : NCBITRPC1 [Mapview hg19]  TRPC1 [Mapview hg38]
OMIM602343   
Gene and transcription
Genbank (Entrez)AB255425 AF483645 AI280444 BC112338 BC113953
RefSeq transcript (Entrez)NM_001251845 NM_003304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC1
Alternative Splicing GalleryENSG00000144935
Gene ExpressionTRPC1 [ NCBI-GEO ]   TRPC1 [ EBI - ARRAY_EXPRESS ]   TRPC1 [ SEEK ]   TRPC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7220
GTEX Portal (Tissue expression)TRPC1
Human Protein AtlasENSG00000144935-TRPC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC1
DMDM Disease mutations7220
Blocks (Seattle)TRPC1
Human Protein Atlas [tissue]ENSG00000144935-TRPC1 [tissue]
HPRD11894
IPIIPI00012081   IPI00220579   IPI00941112   IPI00946570   
Protein Interaction databases
FunCoupENSG00000144935
BioGRIDTRPC1
STRING (EMBL)TRPC1
ZODIACTRPC1
Ontologies - Pathways
Huge Navigator TRPC1 [HugePedia]
snp3D : Map Gene to Disease7220
BioCentury BCIQTRPC1
ClinGenTRPC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7220
Chemical/Pharm GKB GenePA357
Clinical trialTRPC1
Miscellaneous
canSAR (ICR)TRPC1 (select the gene name)
DataMed IndexTRPC1
Probes
Litterature
PubMed168 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC1
EVEXTRPC1
GoPubMedTRPC1
iHOPTRPC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:31 CET 2020

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