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TRPC2 (transient receptor potential cation channel subfamily C member 2, pseudogene)

Identity

Alias_namestransient receptor potential cation channel, subfamily C, member 2
transient receptor potential cation channel, subfamily C, member 2, pseudogene
Other alias-
HGNC (Hugo) TRPC2
LocusID (NCBI) 7221
Atlas_Id 75208
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 3626460 and ends at 3637559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPC2   12334
Cards
Entrez_Gene (NCBI)TRPC2  7221  transient receptor potential cation channel subfamily C member 2, pseudogene
Aliases
GeneCards (Weizmann)TRPC2
Ensembl hg19 (Hinxton)ENSG00000182048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182048 [Gene_View]  chr11:3626460-3637559 [Contig_View]  TRPC2 [Vega]
ICGC DataPortalENSG00000182048
TCGA cBioPortalTRPC2
AceView (NCBI)TRPC2
Genatlas (Paris)TRPC2
WikiGenes7221
SOURCE (Princeton)TRPC2
Genetics Home Reference (NIH)TRPC2
Genomic and cartography
GoldenPath hg38 (UCSC)TRPC2  -     chr11:3626460-3637559 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPC2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRPC2 - 11p15.4 [CytoView hg19]  TRPC2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITRPC2 [Mapview hg19]  TRPC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA423920 AB231779 X89067
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC2
Cluster EST : UnigeneHs.690732 [ NCBI ]
CGAP (NCI)Hs.690732
Alternative Splicing GalleryENSG00000182048
Gene ExpressionTRPC2 [ NCBI-GEO ]   TRPC2 [ EBI - ARRAY_EXPRESS ]   TRPC2 [ SEEK ]   TRPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7221
GTEX Portal (Tissue expression)TRPC2
Human Protein AtlasENSG00000182048-TRPC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC2
DMDM Disease mutations7221
Blocks (Seattle)TRPC2
Human Protein Atlas [tissue]ENSG00000182048-TRPC2 [tissue]
IPIIPI00655780   IPI00869212   
Protein Interaction databases
FunCoupENSG00000182048
BioGRIDTRPC2
STRING (EMBL)TRPC2
ZODIACTRPC2
Ontologies - Pathways
Huge Navigator TRPC2 [HugePedia]
snp3D : Map Gene to Disease7221
BioCentury BCIQTRPC2
ClinGenTRPC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7221
Chemical/Pharm GKB GenePA37007
Clinical trialTRPC2
Miscellaneous
canSAR (ICR)TRPC2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC2
EVEXTRPC2
GoPubMedTRPC2
iHOPTRPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:09 CET 2017

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