TRPC4 (transient receptor potential cation channel, subfamily C, member 4)

Identity

Other names	HTRP4
	MGC119570
	MGC119571
	MGC119572
	MGC119573
	TRP4
HGNC	TRPC4
Location	13q13.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	TRPC4   12336
Entrez_Gene	TRPC4  7223  transient receptor potential cation channel, subfamily C, member 4
	Cards
GeneCards	TRPC4
Ensembl	TRPC4 [Search_View]   ENSG00000133107 [Gene_View]
Genatlas	TRPC4
GeneLynx	TRPC4
eGenome	TRPC4
euGene	7223
	Genomic and cartography
GoldenPath	TRPC4  -  13q13.3   chr13:37108795-37341935 -  13q13.3   [Description]    (hg18-March_2006)
Ensembl	TRPC4 - 13q13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRPC4
	Gene and transcription
Genbank	AF063822 [ ENTREZ ]
Genbank	AF063823 [ ENTREZ ]
Genbank	AF063824 [ ENTREZ ]
Genbank	AF063825 [ ENTREZ ]
Genbank	AF175406 [ ENTREZ ]
RefSeq	NM_016179 [ SRS ]    NM_016179 [ ENTREZ ]
RefSeq	AC_000056 [ SRS ]    AC_000056 [ ENTREZ ]
RefSeq	AC_000145 [ SRS ]    AC_000145 [ ENTREZ ]
RefSeq	NC_000013 [ SRS ]    NC_000013 [ ENTREZ ]
RefSeq	NT_024524 [ SRS ]    NT_024524 [ ENTREZ ]
RefSeq	NW_001838073 [ SRS ]    NW_001838073 [ ENTREZ ]
RefSeq	NW_925473 [ SRS ]    NW_925473 [ ENTREZ ]
AceView	TRPC4 AceView - NCBI
Unigene	Hs.262960 [ SRS ]    Hs.262960 [ NCBI ]     HS262960 [ spliceNest ]
Fast-db	3538 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q2M2U7 [ SRS]    Q2M2U7 [ EXPASY ]     Q2M2U7 [ INTERPRO ]     Q2M2U7 [ UNIPROT ]
Prosite	PS50297 ANK_REP_REGION [ SRS ]    PS50297 ANK_REP_REGION [ Expasy ]
Prosite	PS50088 ANK_REPEAT [ SRS ]    PS50088 ANK_REPEAT [ Expasy ]
Prosite	PS00962 RIBOSOMAL_S2_1 [ SRS ]    PS00962 RIBOSOMAL_S2_1 [ Expasy ]
Interpro	IPR002110 ANK [ SRS ]    IPR002110 ANK [ EBI ]
Interpro	IPR005821 Ion_trans [ SRS ]    IPR005821 Ion_trans [ EBI ]
Interpro	IPR001865 Ribosomal_S2 [ SRS ]    IPR001865 Ribosomal_S2 [ EBI ]
Interpro	IPR002153 Trans_rcpt [ SRS ]    IPR002153 Trans_rcpt [ EBI ]
Interpro	IPR013555 TRP_2 [ SRS ]    IPR013555 TRP_2 [ EBI ]
Interpro	IPR004729 TRP_channel [ SRS ]    IPR004729 TRP_channel [ EBI ]
Interpro	IPR005460 TRP_channel4 [ SRS ]    IPR005460 TRP_channel4 [ EBI ]
CluSTr	Q2M2U7
Pfam	PF00023 Ank [ SRS ]    PF00023 Ank [ Sanger ]    pfam00023 [ NCBI-CDD ]
Pfam	PF00520 Ion_trans [ SRS ]    PF00520 Ion_trans [ Sanger ]    pfam00520 [ NCBI-CDD ]
Pfam	PF08344 TRP_2 [ SRS ]    PF08344 TRP_2 [ Sanger ]    pfam08344 [ NCBI-CDD ]
Smart	SM00248 ANK [EMBL]
Blocks	Q2M2U7
HPRD	09154
	Protein Interaction databases
DIP	Q2M2U7
IntAct	Q2M2U7
	Polymorphism : SNP, mutations, diseases
OMIM	603651    [ map ]
GENECLINICS	603651
SNP	TRPC4 [dbSNP-NCBI]
SNP	NM_016179 [SNP-NCI]
SNP	TRPC4 [GeneSNPs - Utah]  TRPC4] [HGBASE - SRS]
HAPMAP	TRPC4 [HAPMAP]
HGMD	TRPC4
	General knowledge
Family Browser	TRPC4 [UCSC Family Browser]
SOURCE	NM_016179
SMD	Hs.262960
SAGE	Hs.262960
GO	structural constituent of ribosome [Amigo]  structural constituent of ribosome
GO	receptor activity [Amigo]  receptor activity
GO	ion channel activity [Amigo]  ion channel activity
GO	calcium channel activity [Amigo]  calcium channel activity
GO	calcium ion binding [Amigo]  calcium ion binding
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	ribosome [Amigo]  ribosome
GO	plasma membrane [Amigo]  plasma membrane
GO	translation [Amigo]  translation
GO	ion transport [Amigo]  ion transport
GO	calcium ion transport [Amigo]  calcium ion transport
GO	calcium ion transport [Amigo]  calcium ion transport
GO	store-operated calcium channel activity [Amigo]  store-operated calcium channel activity
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	cortical cytoskeleton [Amigo]  cortical cytoskeleton
PubGene	TRPC4
TreeFam	TRPC4
CTD	7223 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRPC4 Related clones (RZPD - Berlin)
	PubMed
PubMed	29 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Sep 29 18:27:10 2008