Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRPC5OS (TRPC5 opposite strand)

Identity

Alias_namesTRPC5-AS1
TRPC5 antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) TRPC5OS
LocusID (NCBI) 100329135
Atlas_Id 75209
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 111876051 and ends at 111903985 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPC5OS   40593
Cards
Entrez_Gene (NCBI)TRPC5OS  100329135  TRPC5 opposite strand
AliasesTRPC5-AS1
GeneCards (Weizmann)TRPC5OS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:111876051-111903985 [Contig_View]  TRPC5OS [Vega]
TCGA cBioPortalTRPC5OS
AceView (NCBI)TRPC5OS
Genatlas (Paris)TRPC5OS
WikiGenes100329135
SOURCE (Princeton)TRPC5OS
Genetics Home Reference (NIH)TRPC5OS
Genomic and cartography
GoldenPath hg38 (UCSC)TRPC5OS  -     chrX:111876051-111903985 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPC5OS  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblTRPC5OS - Xq23 [CytoView hg19]  TRPC5OS - Xq23 [CytoView hg38]
Mapping of homologs : NCBITRPC5OS [Mapview hg19]  TRPC5OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034811 BF510645 DB076612 DB096871 DB458957
RefSeq transcript (Entrez)NM_001195576 NM_001195577 NM_001195578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC5OS
Cluster EST : UnigeneHs.745438 [ NCBI ]
CGAP (NCI)Hs.745438
Gene ExpressionTRPC5OS [ NCBI-GEO ]   TRPC5OS [ EBI - ARRAY_EXPRESS ]   TRPC5OS [ SEEK ]   TRPC5OS [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC5OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100329135
GTEX Portal (Tissue expression)TRPC5OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMA1
Splice isoforms : SwissVarA6NMA1
PhosPhoSitePlusA6NMA1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC5OS
DMDM Disease mutations100329135
Blocks (Seattle)TRPC5OS
SuperfamilyA6NMA1
Peptide AtlasA6NMA1
IPIIPI00747445   
Protein Interaction databases
DIP (DOE-UCLA)A6NMA1
IntAct (EBI)A6NMA1
BioGRIDTRPC5OS
STRING (EMBL)TRPC5OS
ZODIACTRPC5OS
Ontologies - Pathways
QuickGOA6NMA1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTRPC5OS
Atlas of Cancer Signalling NetworkTRPC5OS
Wikipedia pathwaysTRPC5OS
Orthology - Evolution
OrthoDB100329135
Phylogenetic Trees/Animal Genes : TreeFamTRPC5OS
HOVERGENA6NMA1
HOGENOMA6NMA1
Homologs : HomoloGeneTRPC5OS
Homology/Alignments : Family Browser (UCSC)TRPC5OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPC5OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRPC5OS
dbVarTRPC5OS
ClinVarTRPC5OS
1000_GenomesTRPC5OS 
Exome Variant ServerTRPC5OS
ExAC (Exome Aggregation Consortium)TRPC5OS (select the gene name)
Genetic variants : HAPMAP100329135
Genomic Variants (DGV)TRPC5OS [DGVbeta]
DECIPHERTRPC5OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRPC5OS 
Mutations
ICGC Data PortalTRPC5OS 
TCGA Data PortalTRPC5OS 
Broad Tumor PortalTRPC5OS
OASIS PortalTRPC5OS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRPC5OS
BioMutasearch TRPC5OS
DgiDB (Drug Gene Interaction Database)TRPC5OS
DoCM (Curated mutations)TRPC5OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRPC5OS (select a term)
intoGenTRPC5OS
Cancer3DTRPC5OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRPC5OS
Genetic Testing Registry TRPC5OS
NextProtA6NMA1 [Medical]
TSGene100329135
GENETestsTRPC5OS
Target ValidationTRPC5OS
Huge Navigator TRPC5OS [HugePedia]
snp3D : Map Gene to Disease100329135
BioCentury BCIQTRPC5OS
ClinGenTRPC5OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100329135
Clinical trialTRPC5OS
Miscellaneous
canSAR (ICR)TRPC5OS (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC5OS
EVEXTRPC5OS
GoPubMedTRPC5OS
iHOPTRPC5OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.