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TRPC5OS (TRPC5 opposite strand)

Identity

Alias_namesTRPC5-AS1
TRPC5 antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) TRPC5OS
LocusID (NCBI) 100329135
Atlas_Id 75209
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 111119279 and ends at 111147213 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPC5OS   40593
Cards
Entrez_Gene (NCBI)TRPC5OS  100329135  TRPC5 opposite strand
AliasesTRPC5-AS1
GeneCards (Weizmann)TRPC5OS
Ensembl hg19 (Hinxton) [Gene_View]  chrX:111119279-111147213 [Contig_View]  TRPC5OS [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:111119279-111147213 [Contig_View]  TRPC5OS [Vega]
TCGA cBioPortalTRPC5OS
AceView (NCBI)TRPC5OS
Genatlas (Paris)TRPC5OS
WikiGenes100329135
SOURCE (Princeton)TRPC5OS
Genetics Home Reference (NIH)TRPC5OS
Genomic and cartography
GoldenPath hg19 (UCSC)TRPC5OS  -     chrX:111119279-111147213 +  Xq23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRPC5OS  -     Xq23   [Description]    (hg38-Dec_2013)
EnsemblTRPC5OS - Xq23 [CytoView hg19]  TRPC5OS - Xq23 [CytoView hg38]
Mapping of homologs : NCBITRPC5OS [Mapview hg19]  TRPC5OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034811 BF510645 DB076612 DB096871 DB458957
RefSeq transcript (Entrez)NM_001195576 NM_001195577 NM_001195578
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)TRPC5OS
Cluster EST : UnigeneHs.745438 [ NCBI ]
CGAP (NCI)Hs.745438
Gene ExpressionTRPC5OS [ NCBI-GEO ]   TRPC5OS [ EBI - ARRAY_EXPRESS ]   TRPC5OS [ SEEK ]   TRPC5OS [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC5OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100329135
GTEX Portal (Tissue expression)TRPC5OS
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC5OS
DMDM Disease mutations100329135
Blocks (Seattle)TRPC5OS
IPIIPI00747445   
Protein Interaction databases
BioGRIDTRPC5OS
STRING (EMBL)TRPC5OS
ZODIACTRPC5OS
Ontologies - Pathways
Huge Navigator TRPC5OS [HugePedia]
snp3D : Map Gene to Disease100329135
BioCentury BCIQTRPC5OS
ClinGenTRPC5OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100329135
Clinical trialTRPC5OS
Miscellaneous
canSAR (ICR)TRPC5OS (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC5OS
EVEXTRPC5OS
GoPubMedTRPC5OS
iHOPTRPC5OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:53 CET 2017

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