Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRPC5OS (TRPC5 opposite strand)

Identity

Alias (NCBI)TRPC5-AS1
HGNC (Hugo) TRPC5OS
HGNC Previous nameTRPC5-AS1
HGNC Previous nameTRPC5 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 100329135
Atlas_Id 75209
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 111876200 and ends at 111903985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TRPC5OS   40593
Cards
Entrez_Gene (NCBI)TRPC5OS    TRPC5 opposite strand
AliasesTRPC5-AS1
GeneCards (Weizmann)TRPC5OS
Ensembl hg19 (Hinxton)ENSG00000204025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204025 [Gene_View]  ENSG00000204025 [Sequence]  chrX:111876200-111903985 [Contig_View]  TRPC5OS [Vega]
ICGC DataPortalENSG00000204025
TCGA cBioPortalTRPC5OS
AceView (NCBI)TRPC5OS
Genatlas (Paris)TRPC5OS
SOURCE (Princeton)TRPC5OS
Genetics Home Reference (NIH)TRPC5OS
Genomic and cartography
GoldenPath hg38 (UCSC)TRPC5OS  -     chrX:111876200-111903985 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPC5OS  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathTRPC5OS - Xq23 [CytoView hg19]  TRPC5OS - Xq23 [CytoView hg38]
ImmunoBaseENSG00000204025
genome Data Viewer NCBITRPC5OS [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC034811 BF510645 DB076612 DB096871 DB458957
RefSeq transcript (Entrez)NM_001195576 NM_001195577 NM_001195578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC5OS
Alternative Splicing GalleryENSG00000204025
Gene ExpressionTRPC5OS [ NCBI-GEO ]   TRPC5OS [ EBI - ARRAY_EXPRESS ]   TRPC5OS [ SEEK ]   TRPC5OS [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC5OS [ Firebrowse - Broad ]
GenevisibleExpression of TRPC5OS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100329135
GTEX Portal (Tissue expression)TRPC5OS
Human Protein AtlasENSG00000204025-TRPC5OS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMA1
Splice isoforms : SwissVarA6NMA1
PhosPhoSitePlusA6NMA1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC5OS
Blocks (Seattle)TRPC5OS
SuperfamilyA6NMA1
Human Protein Atlas [tissue]ENSG00000204025-TRPC5OS [tissue]
Peptide AtlasA6NMA1
IPIIPI00747445   
Protein Interaction databases
DIP (DOE-UCLA)A6NMA1
IntAct (EBI)A6NMA1
BioGRIDTRPC5OS
STRING (EMBL)TRPC5OS
ZODIACTRPC5OS
Ontologies - Pathways
QuickGOA6NMA1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTRPC5OS
Atlas of Cancer Signalling NetworkTRPC5OS
Wikipedia pathwaysTRPC5OS
Orthology - Evolution
OrthoDB100329135
GeneTree (enSembl)ENSG00000204025
Phylogenetic Trees/Animal Genes : TreeFamTRPC5OS
HOGENOMA6NMA1
Homologs : HomoloGeneTRPC5OS
Homology/Alignments : Family Browser (UCSC)TRPC5OS
Gene fusions - Rearrangements
Fusion : QuiverTRPC5OS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPC5OS [hg38]
dbVarTRPC5OS
ClinVarTRPC5OS
MonarchTRPC5OS
1000_GenomesTRPC5OS 
Exome Variant ServerTRPC5OS
GNOMAD BrowserENSG00000204025
Varsome BrowserTRPC5OS
Genomic Variants (DGV)TRPC5OS [DGVbeta]
DECIPHERTRPC5OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRPC5OS 
Mutations
ICGC Data PortalTRPC5OS 
TCGA Data PortalTRPC5OS 
Broad Tumor PortalTRPC5OS
OASIS PortalTRPC5OS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRPC5OS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRPC5OS
Mutations and Diseases : HGMDTRPC5OS
BioMutasearch TRPC5OS
DgiDB (Drug Gene Interaction Database)TRPC5OS
DoCM (Curated mutations)TRPC5OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRPC5OS (select a term)
intoGenTRPC5OS
Cancer3DTRPC5OS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRPC5OS
MedgenTRPC5OS
Genetic Testing Registry TRPC5OS
NextProtA6NMA1 [Medical]
GENETestsTRPC5OS
Target ValidationTRPC5OS
Huge Navigator TRPC5OS [HugePedia]
ClinGenTRPC5OS
Clinical trials, drugs, therapy
MyCancerGenomeTRPC5OS
Protein Interactions : CTD
Clinical trialTRPC5OS
Miscellaneous
canSAR (ICR)TRPC5OS (select the gene name)
HarmonizomeTRPC5OS
DataMed IndexTRPC5OS
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC5OS
EVEXTRPC5OS
GoPubMedTRPC5OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:33:21 CET 2020

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