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TRPC6 (transient receptor potential cation channel subfamily C member 6)

Identity

Alias_namesFSGS2
focal segmental glomerulosclerosis 2
transient receptor potential cation channel, subfamily C, member 6
Alias_symbol (synonym)TRP6
Other alias
HGNC (Hugo) TRPC6
LocusID (NCBI) 7225
Atlas_Id 50292
Location 11q22.1  [Link to chromosome band 11q22]
Location_base_pair Starts at 101451564 and ends at 101583928 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNMT3A (2p23.3) / TRPC6 (11q22.1)PIK3C3 (18q12.3) / TRPC6 (11q22.1)TRPC6 (11q22.1) / HLA-B (6p21.33)
TRPC6 (11q22.1) / NUDCD1 (8q23.1)PIK3C3 18q12.3 / TRPC6 11q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias TL_t0811q23q22ID3302


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0211p23q22ID104983 TT_t1118q22q12ID101016


External links

Nomenclature
HGNC (Hugo)TRPC6   12338
Cards
Entrez_Gene (NCBI)TRPC6  7225  transient receptor potential cation channel subfamily C member 6
AliasesFSGS2; TRP6
GeneCards (Weizmann)TRPC6
Ensembl hg19 (Hinxton)ENSG00000137672 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137672 [Gene_View]  ENSG00000137672 [Sequence]  chr11:101451564-101583928 [Contig_View]  TRPC6 [Vega]
ICGC DataPortalENSG00000137672
TCGA cBioPortalTRPC6
AceView (NCBI)TRPC6
Genatlas (Paris)TRPC6
WikiGenes7225
SOURCE (Princeton)TRPC6
Genetics Home Reference (NIH)TRPC6
Genomic and cartography
GoldenPath hg38 (UCSC)TRPC6  -     chr11:101451564-101583928 -  11q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPC6  -     11q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTRPC6 - 11q22.1 [CytoView hg19]  TRPC6 - 11q22.1 [CytoView hg38]
ImmunoBaseENSG00000137672
Mapping of homologs : NCBITRPC6 [Mapview hg19]  TRPC6 [Mapview hg38]
OMIM603652   603965   
Gene and transcription
Genbank (Entrez)AF080394 AF086426 AJ006276 AJ007018 AJ271066
RefSeq transcript (Entrez)NM_004621
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC6
Alternative Splicing GalleryENSG00000137672
Gene ExpressionTRPC6 [ NCBI-GEO ]   TRPC6 [ EBI - ARRAY_EXPRESS ]   TRPC6 [ SEEK ]   TRPC6 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7225
GTEX Portal (Tissue expression)TRPC6
Human Protein AtlasENSG00000137672-TRPC6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC6
DMDM Disease mutations7225
Blocks (Seattle)TRPC6
Human Protein Atlas [tissue]ENSG00000137672-TRPC6 [tissue]
HPRD04710
IPIIPI00031683   IPI00220552   IPI00220553   IPI00976344   
Protein Interaction databases
FunCoupENSG00000137672
BioGRIDTRPC6
STRING (EMBL)TRPC6
ZODIACTRPC6
Ontologies - Pathways
Huge Navigator TRPC6 [HugePedia]
snp3D : Map Gene to Disease7225
BioCentury BCIQTRPC6
ClinGenTRPC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7225
Chemical/Pharm GKB GenePA37011
Clinical trialTRPC6
Miscellaneous
canSAR (ICR)TRPC6 (select the gene name)
DataMed IndexTRPC6
Probes
Litterature
PubMed189 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC6
EVEXTRPC6
GoPubMedTRPC6
iHOPTRPC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:14:32 CET 2020

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