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TRPC7-AS2 (TRPC7 antisense RNA 2)

Identity

Alias (NCBI)CTB-28J9.2
HGNC (Hugo) TRPC7-AS2
HGNC Previous nameTRPC7 antisense RNA 2 (non-protein coding)
LocusID (NCBI) 106478968
Atlas_Id 78028
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 136226655 and ends at 136316100 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TRPC7-AS2   40937
Cards
Entrez_Gene (NCBI)TRPC7-AS2    TRPC7 antisense RNA 2
AliasesCTB-28J9.2
GeneCards (Weizmann)TRPC7-AS2
Ensembl hg19 (Hinxton)ENSG00000250947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250947 [Gene_View]  ENSG00000250947 [Sequence]  chr5:136226655-136316100 [Contig_View]  TRPC7-AS2 [Vega]
ICGC DataPortalENSG00000250947
TCGA cBioPortalTRPC7-AS2
AceView (NCBI)TRPC7-AS2
Genatlas (Paris)TRPC7-AS2
SOURCE (Princeton)TRPC7-AS2
Genetics Home Reference (NIH)TRPC7-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)TRPC7-AS2  -     chr5:136226655-136316100 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPC7-AS2  -     5q31.1   [Description]    (hg19-Feb_2009)
GoldenPathTRPC7-AS2 - 5q31.1 [CytoView hg19]  TRPC7-AS2 - 5q31.1 [CytoView hg38]
ImmunoBaseENSG00000250947
Genome Data Viewer NCBITRPC7-AS2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BI765200
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC7-AS2
Gene ExpressionTRPC7-AS2 [ NCBI-GEO ]   TRPC7-AS2 [ EBI - ARRAY_EXPRESS ]   TRPC7-AS2 [ SEEK ]   TRPC7-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC7-AS2 [ Firebrowse - Broad ]
GenevisibleExpression of TRPC7-AS2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)106478968
GTEX Portal (Tissue expression)TRPC7-AS2
Human Protein AtlasENSG00000250947-TRPC7-AS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPC7-AS2
Human Protein Atlas [tissue]ENSG00000250947-TRPC7-AS2 [tissue]
Protein Interaction databases
BioGRIDTRPC7-AS2
STRING (EMBL)TRPC7-AS2
ZODIACTRPC7-AS2
Ontologies - Pathways
Litterature
GeneRIFsGene References Into Functions (Entrez)
EVEXTRPC7-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:05 CEST 2021

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