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TRPC7 (transient receptor potential cation channel subfamily C member 7)

Identity

Alias_namestransient receptor potential cation channel
Other aliasTRP7
HGNC (Hugo) TRPC7
LocusID (NCBI) 57113
Atlas_Id 56042
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135548999 and ends at 135701164 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NDUFA9 (12p13.32) / TRPC7 (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPC7   20754
Cards
Entrez_Gene (NCBI)TRPC7  57113  transient receptor potential cation channel subfamily C member 7
AliasesTRP7
GeneCards (Weizmann)TRPC7
Ensembl hg19 (Hinxton)ENSG00000069018 [Gene_View]  chr5:135548999-135701164 [Contig_View]  TRPC7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000069018 [Gene_View]  chr5:135548999-135701164 [Contig_View]  TRPC7 [Vega]
ICGC DataPortalENSG00000069018
TCGA cBioPortalTRPC7
AceView (NCBI)TRPC7
Genatlas (Paris)TRPC7
WikiGenes57113
SOURCE (Princeton)TRPC7
Genetics Home Reference (NIH)TRPC7
Genomic and cartography
GoldenPath hg19 (UCSC)TRPC7  -     chr5:135548999-135701164 -  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRPC7  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblTRPC7 - 5q31.1 [CytoView hg19]  TRPC7 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBITRPC7 [Mapview hg19]  TRPC7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001167576 NM_001167577 NM_020389
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPC7
Cluster EST : UnigeneHs.591263 [ NCBI ]
CGAP (NCI)Hs.591263
Alternative Splicing GalleryENSG00000069018
Gene ExpressionTRPC7 [ NCBI-GEO ]   TRPC7 [ EBI - ARRAY_EXPRESS ]   TRPC7 [ SEEK ]   TRPC7 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57113
GTEX Portal (Tissue expression)TRPC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCX4
Splice isoforms : SwissVarQ9HCX4
PhosPhoSitePlusQ9HCX4
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ion_trans_dom    TRP_channel    TRP_dom    TRPC7_channel    TRPC_channel   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Ion_trans (PF00520)    TRP_2 (PF08344)   
Domain families : Pfam (NCBI)pfam12796    pfam00520    pfam08344   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)TRPC7
DMDM Disease mutations57113
Blocks (Seattle)TRPC7
SuperfamilyQ9HCX4
Human Protein AtlasENSG00000069018
Peptide AtlasQ9HCX4
HPRD18228
IPIIPI00030930   IPI00965155   IPI00964538   IPI00418621   IPI00335274   IPI00428059   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCX4
IntAct (EBI)Q9HCX4
FunCoupENSG00000069018
BioGRIDTRPC7
STRING (EMBL)TRPC7
ZODIACTRPC7
Ontologies - Pathways
QuickGOQ9HCX4
Ontology : AmiGOcalcium channel activity  protein binding  nuclear envelope  cis-Golgi network  plasma membrane  integral component of plasma membrane  manganese ion transport  single fertilization  store-operated calcium channel activity  platelet activation  perinuclear region of cytoplasm  regulation of cytosolic calcium ion concentration  calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium channel activity  protein binding  nuclear envelope  cis-Golgi network  plasma membrane  integral component of plasma membrane  manganese ion transport  single fertilization  store-operated calcium channel activity  platelet activation  perinuclear region of cytoplasm  regulation of cytosolic calcium ion concentration  calcium ion transmembrane transport  
NDEx NetworkTRPC7
Atlas of Cancer Signalling NetworkTRPC7
Wikipedia pathwaysTRPC7
Orthology - Evolution
OrthoDB57113
GeneTree (enSembl)ENSG00000069018
Phylogenetic Trees/Animal Genes : TreeFamTRPC7
HOVERGENQ9HCX4
HOGENOMQ9HCX4
Homologs : HomoloGeneTRPC7
Homology/Alignments : Family Browser (UCSC)TRPC7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRPC7
dbVarTRPC7
ClinVarTRPC7
1000_GenomesTRPC7 
Exome Variant ServerTRPC7
ExAC (Exome Aggregation Consortium)TRPC7 (select the gene name)
Genetic variants : HAPMAP57113
Genomic Variants (DGV)TRPC7 [DGVbeta]
DECIPHER (Syndromes)5:135548999-135701164  ENSG00000069018
CONAN: Copy Number AnalysisTRPC7 
Mutations
ICGC Data PortalTRPC7 
TCGA Data PortalTRPC7 
Broad Tumor PortalTRPC7
OASIS PortalTRPC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRPC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRPC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRPC7
DgiDB (Drug Gene Interaction Database)TRPC7
DoCM (Curated mutations)TRPC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRPC7 (select a term)
intoGenTRPC7
Cancer3DTRPC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRPC7
Genetic Testing Registry TRPC7
NextProtQ9HCX4 [Medical]
TSGene57113
GENETestsTRPC7
Huge Navigator TRPC7 [HugePedia]
snp3D : Map Gene to Disease57113
BioCentury BCIQTRPC7
ClinGenTRPC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57113
Chemical/Pharm GKB GenePA164742693
Clinical trialTRPC7
Miscellaneous
canSAR (ICR)TRPC7 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPC7
EVEXTRPC7
GoPubMedTRPC7
iHOPTRPC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:32:28 CET 2017

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