Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRPM3 (transient receptor potential cation channel subfamily M member 3)

Identity

Alias (NCBI)GON-2
LTRPC3
MLSN2
HGNC (Hugo) TRPM3
HGNC Alias symbKIAA1616
LTRPC3
GON-2
HGNC Alias namemelastatin 2
HGNC Previous nametransient receptor potential cation channel, subfamily M, member 3
LocusID (NCBI) 80036
Atlas_Id 55070
Location 9q21.12  [Link to chromosome band 9q21]
Location_base_pair Starts at 70783857 and ends at 70869052 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARL10 (5q35.2) / TRPM3 (9q21.12)MNX1 (7q36.3) / TRPM3 (9q21.12)SP3 (2q31.1) / TRPM3 (9q21.12)
TRPM3 (9q21.12) / IQGAP1 (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TRPM3   17992
Cards
Entrez_Gene (NCBI)TRPM3    transient receptor potential cation channel subfamily M member 3
AliasesGON-2; LTRPC3; MLSN2
GeneCards (Weizmann)TRPM3
Ensembl hg19 (Hinxton)ENSG00000083067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083067 [Gene_View]  ENSG00000083067 [Sequence]  chr9:70783857-70869052 [Contig_View]  TRPM3 [Vega]
ICGC DataPortalENSG00000083067
TCGA cBioPortalTRPM3
AceView (NCBI)TRPM3
Genatlas (Paris)TRPM3
SOURCE (Princeton)TRPM3
Genetics Home Reference (NIH)TRPM3
Genomic and cartography
GoldenPath hg38 (UCSC)TRPM3  -     chr9:70783857-70869052 -  9q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPM3  -     9q21.12   [Description]    (hg19-Feb_2009)
GoldenPathTRPM3 - 9q21.12 [CytoView hg19]  TRPM3 - 9q21.12 [CytoView hg38]
ImmunoBaseENSG00000083067
Genome Data Viewer NCBITRPM3 [Mapview hg19]  
OMIM608961   
Gene and transcription
Genbank (Entrez)AB046836 AB099661 AB099662 AB099663 AB099664
RefSeq transcript (Entrez)NM_001007470 NM_001007471 NM_001366141 NM_001366142 NM_001366143 NM_001366144 NM_001366145 NM_001366146 NM_001366147 NM_001366148 NM_001366149 NM_001366150 NM_001366151 NM_001366152 NM_001366153 NM_001366154 NM_020952 NM_024971 NM_206944 NM_206945 NM_206946 NM_206947 NM_206948
Consensus coding sequences : CCDS (NCBI)TRPM3
Gene ExpressionTRPM3 [ NCBI-GEO ]   TRPM3 [ EBI - ARRAY_EXPRESS ]   TRPM3 [ SEEK ]   TRPM3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPM3 [ Firebrowse - Broad ]
GenevisibleExpression of TRPM3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80036
GTEX Portal (Tissue expression)TRPM3
Human Protein AtlasENSG00000083067-TRPM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPM3
Human Protein Atlas [tissue]ENSG00000083067-TRPM3 [tissue]
HPRD10605
Protein Interaction databases
BioGRIDTRPM3
STRING (EMBL)TRPM3
ZODIACTRPM3
Ontologies - Pathways
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRPM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:32 CEST 2021

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