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TRPM3 (transient receptor potential cation channel subfamily M member 3)

Identity

Alias_namestransient receptor potential cation channel
Alias_symbol (synonym)KIAA1616
LTRPC3
GON-2
Other aliasMLSN2
HGNC (Hugo) TRPM3
LocusID (NCBI) 80036
Atlas_Id 55070
Location 9q21.12  [Link to chromosome band 9q21]
Location_base_pair Starts at 73398778 and ends at 73483974 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARL10 (5q35.2) / TRPM3 (9q21.12)MNX1 (7q36.3) / TRPM3 (9q21.12)SP3 (2q31.1) / TRPM3 (9q21.12)
TRPM3 (9q21.12) / IQGAP1 (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPM3   17992
Cards
Entrez_Gene (NCBI)TRPM3  80036  transient receptor potential cation channel subfamily M member 3
AliasesGON-2; LTRPC3; MLSN2
GeneCards (Weizmann)TRPM3
Ensembl hg19 (Hinxton)ENSG00000083067 [Gene_View]  chr9:73398778-73483974 [Contig_View]  TRPM3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000083067 [Gene_View]  chr9:73398778-73483974 [Contig_View]  TRPM3 [Vega]
ICGC DataPortalENSG00000083067
TCGA cBioPortalTRPM3
AceView (NCBI)TRPM3
Genatlas (Paris)TRPM3
WikiGenes80036
SOURCE (Princeton)TRPM3
Genetics Home Reference (NIH)TRPM3
Genomic and cartography
GoldenPath hg19 (UCSC)TRPM3  -     chr9:73398778-73483974 -  9q21.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRPM3  -     9q21.12   [Description]    (hg38-Dec_2013)
EnsemblTRPM3 - 9q21.12 [CytoView hg19]  TRPM3 - 9q21.12 [CytoView hg38]
Mapping of homologs : NCBITRPM3 [Mapview hg19]  TRPM3 [Mapview hg38]
OMIM608961   
Gene and transcription
Genbank (Entrez)AB046836 AB099661 AB099662 AB099663 AB099664
RefSeq transcript (Entrez)NM_001007470 NM_001007471 NM_020952 NM_024971 NM_206944 NM_206945 NM_206946 NM_206947 NM_206948
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)TRPM3
Cluster EST : UnigeneHs.47288 [ NCBI ]
CGAP (NCI)Hs.47288
Alternative Splicing GalleryENSG00000083067
Gene ExpressionTRPM3 [ NCBI-GEO ]   TRPM3 [ EBI - ARRAY_EXPRESS ]   TRPM3 [ SEEK ]   TRPM3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80036
GTEX Portal (Tissue expression)TRPM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCF6
Splice isoforms : SwissVarQ9HCF6
PhosPhoSitePlusQ9HCF6
Domains : Interpro (EBI)Ion_trans_dom    TRPM3    TRPM_tetra   
Domain families : Pfam (Sanger)Ion_trans (PF00520)    TRPM_tetra (PF16519)   
Domain families : Pfam (NCBI)pfam00520    pfam16519   
Conserved Domain (NCBI)TRPM3
DMDM Disease mutations80036
Blocks (Seattle)TRPM3
SuperfamilyQ9HCF6
Human Protein AtlasENSG00000083067
Peptide AtlasQ9HCF6
HPRD10605
IPIIPI00328399   IPI00552215   IPI00964809   IPI00552380   IPI00410306   IPI00553010   IPI00410304   IPI00552239   IPI00410153   IPI00479292   IPI00017272   IPI01014381   IPI00827850   IPI00382829   IPI00654589   IPI00947135   IPI00816284   IPI00300583   IPI00747537   IPI00815909   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCF6
IntAct (EBI)Q9HCF6
FunCoupENSG00000083067
BioGRIDTRPM3
STRING (EMBL)TRPM3
ZODIACTRPM3
Ontologies - Pathways
QuickGOQ9HCF6
Ontology : AmiGOcalcium activated cation channel activity  cation channel activity  calcium channel activity  plasma membrane  cation transport  integral component of membrane  detection of temperature stimulus  sensory perception of temperature stimulus  protein tetramerization  calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium activated cation channel activity  cation channel activity  calcium channel activity  plasma membrane  cation transport  integral component of membrane  detection of temperature stimulus  sensory perception of temperature stimulus  protein tetramerization  calcium ion transmembrane transport  
NDEx NetworkTRPM3
Atlas of Cancer Signalling NetworkTRPM3
Wikipedia pathwaysTRPM3
Orthology - Evolution
OrthoDB80036
GeneTree (enSembl)ENSG00000083067
Phylogenetic Trees/Animal Genes : TreeFamTRPM3
HOVERGENQ9HCF6
HOGENOMQ9HCF6
Homologs : HomoloGeneTRPM3
Homology/Alignments : Family Browser (UCSC)TRPM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRPM3
dbVarTRPM3
ClinVarTRPM3
1000_GenomesTRPM3 
Exome Variant ServerTRPM3
ExAC (Exome Aggregation Consortium)TRPM3 (select the gene name)
Genetic variants : HAPMAP80036
Genomic Variants (DGV)TRPM3 [DGVbeta]
DECIPHER (Syndromes)9:73398778-73483974  ENSG00000083067
CONAN: Copy Number AnalysisTRPM3 
Mutations
ICGC Data PortalTRPM3 
TCGA Data PortalTRPM3 
Broad Tumor PortalTRPM3
OASIS PortalTRPM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRPM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRPM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRPM3
DgiDB (Drug Gene Interaction Database)TRPM3
DoCM (Curated mutations)TRPM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRPM3 (select a term)
intoGenTRPM3
Cancer3DTRPM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608961   
Orphanet
MedgenTRPM3
Genetic Testing Registry TRPM3
NextProtQ9HCF6 [Medical]
TSGene80036
GENETestsTRPM3
Huge Navigator TRPM3 [HugePedia]
snp3D : Map Gene to Disease80036
BioCentury BCIQTRPM3
ClinGenTRPM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80036
Chemical/Pharm GKB GenePA38271
Clinical trialTRPM3
Miscellaneous
canSAR (ICR)TRPM3 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPM3
EVEXTRPM3
GoPubMedTRPM3
iHOPTRPM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:36 CEST 2017

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