Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRPM5 (transient receptor potential cation channel subfamily M member 5)

Identity

Alias_namestransient receptor potential cation channel, subfamily M, member 5
Alias_symbol (synonym)LTRPC5
MTR1
Other alias
HGNC (Hugo) TRPM5
LocusID (NCBI) 29850
Atlas_Id 42708
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 2404516 and ends at 2423045 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPM5   14323
Cards
Entrez_Gene (NCBI)TRPM5  29850  transient receptor potential cation channel subfamily M member 5
AliasesLTRPC5; MTR1
GeneCards (Weizmann)TRPM5
Ensembl hg19 (Hinxton)ENSG00000070985 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000070985 [Gene_View]  ENSG00000070985 [Sequence]  chr11:2404516-2423045 [Contig_View]  TRPM5 [Vega]
ICGC DataPortalENSG00000070985
TCGA cBioPortalTRPM5
AceView (NCBI)TRPM5
Genatlas (Paris)TRPM5
WikiGenes29850
SOURCE (Princeton)TRPM5
Genetics Home Reference (NIH)TRPM5
Genomic and cartography
GoldenPath hg38 (UCSC)TRPM5  -     chr11:2404516-2423045 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPM5  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathTRPM5 - 11p15.5 [CytoView hg19]  TRPM5 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000070985
Mapping of homologs : NCBITRPM5 [Mapview hg19]  TRPM5 [Mapview hg38]
OMIM604600   
Gene and transcription
Genbank (Entrez)AF177473 AJ270996 BC093787 BC093789 BC143351
RefSeq transcript (Entrez)NM_014555
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPM5
Alternative Splicing GalleryENSG00000070985
Gene ExpressionTRPM5 [ NCBI-GEO ]   TRPM5 [ EBI - ARRAY_EXPRESS ]   TRPM5 [ SEEK ]   TRPM5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)29850
GTEX Portal (Tissue expression)TRPM5
Human Protein AtlasENSG00000070985-TRPM5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPM5
DMDM Disease mutations29850
Blocks (Seattle)TRPM5
Human Protein Atlas [tissue]ENSG00000070985-TRPM5 [tissue]
HPRD16064
IPIIPI00942704   IPI00329503   IPI00889744   IPI00981218   IPI00976379   
Protein Interaction databases
FunCoupENSG00000070985
BioGRIDTRPM5
STRING (EMBL)TRPM5
ZODIACTRPM5
Ontologies - Pathways
Huge Navigator TRPM5 [HugePedia]
snp3D : Map Gene to Disease29850
BioCentury BCIQTRPM5
ClinGenTRPM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29850
Chemical/Pharm GKB GenePA37869
Clinical trialTRPM5
Miscellaneous
canSAR (ICR)TRPM5 (select the gene name)
DataMed IndexTRPM5
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPM5
EVEXTRPM5
GoPubMedTRPM5
iHOPTRPM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:14:33 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.