TRPS1 (trichorhinophalangeal syndrome I)

Identity

Other names	GC79
	LGCR
	MGC134928
HGNC	TRPS1
Location	8q23.3
Location_base_pair	Starts at 116489900 and ends at 116750402 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TRPS1   12340
Entrez_Gene	TRPS1  7227  trichorhinophalangeal syndrome I
	Cards
GeneCards	TRPS1
Ensembl	TRPS1 [Search_View]   ENSG00000104447 [Gene_View]
Genatlas	TRPS1
GeneLynx	TRPS1
eGenome	TRPS1
euGene	7227
	Genomic and cartography
GoldenPath	TRPS1  -  8q23.3   chr8:116489900-116750402 -  8q23.3   [Description]    (hg18-March_2006)
Ensembl	TRPS1 - 8q23.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRPS1
	Gene and transcription
Genbank	AF183810 [ ENTREZ ]
Genbank	AF264784 [ ENTREZ ]
Genbank	AK000948 [ ENTREZ ]
Genbank	AK021470 [ ENTREZ ]
Genbank	AK021511 [ ENTREZ ]
RefSeq	NM_014112 [ SRS ]    NM_014112 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_008046 [ SRS ]    NT_008046 [ ENTREZ ]
RefSeq	NW_001839136 [ SRS ]    NW_001839136 [ ENTREZ ]
RefSeq	NW_923984 [ SRS ]    NW_923984 [ ENTREZ ]
AceView	TRPS1 AceView - NCBI
Unigene	Hs.657018 [ SRS ]    Hs.657018 [ NCBI ]     HS657018 [ spliceNest ]
Fast-db	8092 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q08AU2 [ SRS]    Q08AU2 [ EXPASY ]     Q08AU2 [ INTERPRO ]     Q08AU2 [ UNIPROT ]
Prosite	PS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
Interpro	IPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
Interpro	IPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
CluSTr	Q08AU2
Smart	SM00355 ZnF_C2H2 [EMBL]
Blocks	Q08AU2
HPRD	05091
	Protein Interaction databases
DIP	Q08AU2
IntAct	Q08AU2
	Polymorphism : SNP, mutations, diseases
OMIM	190350;190351;604386    [ map ]
GENECLINICS	190350;190351;604386
SNP	TRPS1 [dbSNP-NCBI]
SNP	NM_014112 [SNP-NCI]
SNP	TRPS1 [GeneSNPs - Utah]  TRPS1] [HGBASE - SRS]
HAPMAP	TRPS1 [HAPMAP]
COSMIC	TRPS1 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	skeletal [Translocation breakpoints In Cancer]
HGMD	TRPS1
	General knowledge
Family Browser	TRPS1 [UCSC Family Browser]
SOURCE	NM_014112
SMD	Hs.657018
SAGE	Hs.657018
GO	skeletal development [Amigo]  skeletal development
GO	transcription factor activity [Amigo]  transcription factor activity
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	transcription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GO	NLS-bearing substrate import into nucleus [Amigo]  NLS-bearing substrate import into nucleus
GO	zinc ion binding [Amigo]  zinc ion binding
GO	transcription repressor activity [Amigo]  transcription repressor activity
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	negative regulation of transcription, DNA-dependent [Amigo]  negative regulation of transcription, DNA-dependent
GO	metal ion binding [Amigo]  metal ion binding
PubGene	TRPS1
TreeFam	TRPS1
CTD	7227 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRPS1 Related clones (RZPD - Berlin)
	PubMed
PubMed	20 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Tue Oct 14 20:59:46 2008