Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRPT1 (tRNA phosphotransferase 1)

Identity

Alias_symbol (synonym)MGC11134
Other alias-
HGNC (Hugo) TRPT1
LocusID (NCBI) 83707
Atlas_Id 75213
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64223799 and ends at 64226254 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUMA1 (11q13.4) / TRPT1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q13;q13) NUMA1/TRPT1

External links

Nomenclature
HGNC (Hugo)TRPT1   20316
Cards
Entrez_Gene (NCBI)TRPT1  83707  tRNA phosphotransferase 1
Aliases
GeneCards (Weizmann)TRPT1
Ensembl hg19 (Hinxton)ENSG00000149743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149743 [Gene_View]  chr11:64223799-64226254 [Contig_View]  TRPT1 [Vega]
ICGC DataPortalENSG00000149743
TCGA cBioPortalTRPT1
AceView (NCBI)TRPT1
Genatlas (Paris)TRPT1
WikiGenes83707
SOURCE (Princeton)TRPT1
Genetics Home Reference (NIH)TRPT1
Genomic and cartography
GoldenPath hg38 (UCSC)TRPT1  -     chr11:64223799-64226254 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPT1  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblTRPT1 - 11q13.1 [CytoView hg19]  TRPT1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBITRPT1 [Mapview hg19]  TRPT1 [Mapview hg38]
OMIM610470   
Gene and transcription
Genbank (Entrez)AK026364 AW771318 AY211494 BC005133 BG105545
RefSeq transcript (Entrez)NM_001033678 NM_001160389 NM_001160390 NM_001160392 NM_001160393 NM_001330298 NM_031472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPT1
Cluster EST : UnigeneHs.326586 [ NCBI ]
CGAP (NCI)Hs.326586
Alternative Splicing GalleryENSG00000149743
Gene ExpressionTRPT1 [ NCBI-GEO ]   TRPT1 [ EBI - ARRAY_EXPRESS ]   TRPT1 [ SEEK ]   TRPT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83707
GTEX Portal (Tissue expression)TRPT1
Human Protein AtlasENSG00000149743-TRPT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TN4
Splice isoforms : SwissVarQ86TN4
PhosPhoSitePlusQ86TN4
Domains : Interpro (EBI)Ptrans_KptA/Tpt1   
Domain families : Pfam (Sanger)PTS_2-RNA (PF01885)   
Domain families : Pfam (NCBI)pfam01885   
Conserved Domain (NCBI)TRPT1
DMDM Disease mutations83707
Blocks (Seattle)TRPT1
SuperfamilyQ86TN4
Human Protein Atlas [tissue]ENSG00000149743-TRPT1 [tissue]
Peptide AtlasQ86TN4
HPRD17479
IPIIPI00328580   IPI00651758   IPI00930269   IPI00930313   IPI00873933   IPI01015984   IPI01013485   
Protein Interaction databases
DIP (DOE-UCLA)Q86TN4
IntAct (EBI)Q86TN4
FunCoupENSG00000149743
BioGRIDTRPT1
STRING (EMBL)TRPT1
ZODIACTRPT1
Ontologies - Pathways
QuickGOQ86TN4
Ontology : AmiGOtRNA 2'-phosphotransferase activity  tRNA splicing, via endonucleolytic cleavage and ligation  regulation of protein kinase activity  
Ontology : EGO-EBItRNA 2'-phosphotransferase activity  tRNA splicing, via endonucleolytic cleavage and ligation  regulation of protein kinase activity  
NDEx NetworkTRPT1
Atlas of Cancer Signalling NetworkTRPT1
Wikipedia pathwaysTRPT1
Orthology - Evolution
OrthoDB83707
GeneTree (enSembl)ENSG00000149743
Phylogenetic Trees/Animal Genes : TreeFamTRPT1
HOVERGENQ86TN4
HOGENOMQ86TN4
Homologs : HomoloGeneTRPT1
Homology/Alignments : Family Browser (UCSC)TRPT1
Gene fusions - Rearrangements
Fusion : QuiverTRPT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRPT1
dbVarTRPT1
ClinVarTRPT1
1000_GenomesTRPT1 
Exome Variant ServerTRPT1
ExAC (Exome Aggregation Consortium)ENSG00000149743
GNOMAD BrowserENSG00000149743
Genetic variants : HAPMAP83707
Genomic Variants (DGV)TRPT1 [DGVbeta]
DECIPHERTRPT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRPT1 
Mutations
ICGC Data PortalTRPT1 
TCGA Data PortalTRPT1 
Broad Tumor PortalTRPT1
OASIS PortalTRPT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRPT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRPT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRPT1
DgiDB (Drug Gene Interaction Database)TRPT1
DoCM (Curated mutations)TRPT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRPT1 (select a term)
intoGenTRPT1
Cancer3DTRPT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610470   
Orphanet
DisGeNETTRPT1
MedgenTRPT1
Genetic Testing Registry TRPT1
NextProtQ86TN4 [Medical]
TSGene83707
GENETestsTRPT1
Target ValidationTRPT1
Huge Navigator TRPT1 [HugePedia]
snp3D : Map Gene to Disease83707
BioCentury BCIQTRPT1
ClinGenTRPT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83707
Chemical/Pharm GKB GenePA134964265
Clinical trialTRPT1
Miscellaneous
canSAR (ICR)TRPT1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPT1
EVEXTRPT1
GoPubMedTRPT1
iHOPTRPT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:56:57 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.