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TRPV3 (transient receptor potential cation channel subfamily V member 3)

Identity

Alias (NCBI)FNEPPK2
OLMS
OLMS1
VRL3
HGNC (Hugo) TRPV3
HGNC Alias symbVRL3
HGNC Previous nametransient receptor potential cation channel, subfamily V, member 3
LocusID (NCBI) 162514
Atlas_Id 56156
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3510502 and ends at 3557812 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRPV3   18084
Cards
Entrez_Gene (NCBI)TRPV3    transient receptor potential cation channel subfamily V member 3
AliasesFNEPPK2; OLMS; OLMS1; VRL3
GeneCards (Weizmann)TRPV3
Ensembl hg19 (Hinxton)ENSG00000167723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167723 [Gene_View]  ENSG00000167723 [Sequence]  chr17:3510502-3557812 [Contig_View]  TRPV3 [Vega]
ICGC DataPortalENSG00000167723
TCGA cBioPortalTRPV3
AceView (NCBI)TRPV3
Genatlas (Paris)TRPV3
SOURCE (Princeton)TRPV3
Genetics Home Reference (NIH)TRPV3
Genomic and cartography
GoldenPath hg38 (UCSC)TRPV3  -     chr17:3510502-3557812 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPV3  -     17p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTRPV3 - 17p13.2 [CytoView hg19]  TRPV3 - 17p13.2 [CytoView hg38]
ImmunoBaseENSG00000167723
Genome Data Viewer NCBITRPV3 [Mapview hg19]  
OMIM607066   614594   616400   
Gene and transcription
Genbank (Entrez)AF514998 AJ487035 AK074032 AK092557 AK127330
RefSeq transcript (Entrez)NM_001258205 NM_145068
Consensus coding sequences : CCDS (NCBI)TRPV3
Gene ExpressionTRPV3 [ NCBI-GEO ]   TRPV3 [ EBI - ARRAY_EXPRESS ]   TRPV3 [ SEEK ]   TRPV3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPV3 [ Firebrowse - Broad ]
GenevisibleExpression of TRPV3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162514
GTEX Portal (Tissue expression)TRPV3
Human Protein AtlasENSG00000167723-TRPV3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET8
PhosPhoSitePlusQ8NET8
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    Ion_trans_dom    TRPV    TRPV1-4_channel    TRPV3_channel   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam00520   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)TRPV3
PDB (RSDB)6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
PDB Europe6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
PDB (PDBSum)6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
PDB (IMB)6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
Structural Biology KnowledgeBase6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
SCOP (Structural Classification of Proteins)6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
CATH (Classification of proteins structures)6H9J    6HA6    6MHO    6MHS    6MHV    6MHW    6MHX    6OT2    6OT5    6UW4    6UW6    6UW8    6UW9   
SuperfamilyQ8NET8
AlphaFold pdb e-kbQ8NET8   
Human Protein Atlas [tissue]ENSG00000167723-TRPV3 [tissue]
HPRD06141
Protein Interaction databases
DIP (DOE-UCLA)Q8NET8
IntAct (EBI)Q8NET8
BioGRIDTRPV3
STRING (EMBL)TRPV3
ZODIACTRPV3
Ontologies - Pathways
QuickGOQ8NET8
Ontology : AmiGOion channel activity  calcium channel activity  plasma membrane  integral component of plasma membrane  response to heat  negative regulation of hair cycle  receptor complex  calcium ion transmembrane transport  positive regulation of calcium ion import  calcium ion import across plasma membrane  
Ontology : EGO-EBIion channel activity  calcium channel activity  plasma membrane  integral component of plasma membrane  response to heat  negative regulation of hair cycle  receptor complex  calcium ion transmembrane transport  positive regulation of calcium ion import  calcium ion import across plasma membrane  
NDEx NetworkTRPV3
Atlas of Cancer Signalling NetworkTRPV3
Wikipedia pathwaysTRPV3
Orthology - Evolution
OrthoDB162514
GeneTree (enSembl)ENSG00000167723
Phylogenetic Trees/Animal Genes : TreeFamTRPV3
Homologs : HomoloGeneTRPV3
Homology/Alignments : Family Browser (UCSC)TRPV3
Gene fusions - Rearrangements
Fusion : QuiverTRPV3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRPV3
dbVarTRPV3
ClinVarTRPV3
MonarchTRPV3
1000_GenomesTRPV3 
Exome Variant ServerTRPV3
GNOMAD BrowserENSG00000167723
Varsome BrowserTRPV3
ACMGTRPV3 variants
VarityQ8NET8
Genomic Variants (DGV)TRPV3 [DGVbeta]
DECIPHERTRPV3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRPV3 
Mutations
ICGC Data PortalTRPV3 
TCGA Data PortalTRPV3 
Broad Tumor PortalTRPV3
OASIS PortalTRPV3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRPV3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRPV3
Mutations and Diseases : HGMDTRPV3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRPV3
DgiDB (Drug Gene Interaction Database)TRPV3
DoCM (Curated mutations)TRPV3
CIViC (Clinical Interpretations of Variants in Cancer)TRPV3
Cancer3DTRPV3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607066    614594    616400   
Orphanet23565    8652   
DisGeNETTRPV3
MedgenTRPV3
Genetic Testing Registry TRPV3
NextProtQ8NET8 [Medical]
GENETestsTRPV3
Target ValidationTRPV3
Huge Navigator TRPV3 [HugePedia]
ClinGenTRPV3
Clinical trials, drugs, therapy
MyCancerGenomeTRPV3
Protein Interactions : CTDTRPV3
Pharm GKB GenePA38481
PharosQ8NET8
Clinical trialTRPV3
Miscellaneous
canSAR (ICR)TRPV3
HarmonizomeTRPV3
DataMed IndexTRPV3
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRPV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:33 CEST 2021

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