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TRPV3 (transient receptor potential cation channel subfamily V member 3)

Identity

Alias_namestransient receptor potential cation channel
Alias_symbol (synonym)VRL3
Other aliasFNEPPK2
OLMS
HGNC (Hugo) TRPV3
LocusID (NCBI) 162514
Atlas_Id 56156
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3510502 and ends at 3557995 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPV3   18084
Cards
Entrez_Gene (NCBI)TRPV3  162514  transient receptor potential cation channel subfamily V member 3
AliasesFNEPPK2; OLMS; VRL3
GeneCards (Weizmann)TRPV3
Ensembl hg19 (Hinxton)ENSG00000167723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167723 [Gene_View]  chr17:3510502-3557995 [Contig_View]  TRPV3 [Vega]
ICGC DataPortalENSG00000167723
TCGA cBioPortalTRPV3
AceView (NCBI)TRPV3
Genatlas (Paris)TRPV3
WikiGenes162514
SOURCE (Princeton)TRPV3
Genetics Home Reference (NIH)TRPV3
Genomic and cartography
GoldenPath hg38 (UCSC)TRPV3  -     chr17:3510502-3557995 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPV3  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblTRPV3 - 17p13.2 [CytoView hg19]  TRPV3 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBITRPV3 [Mapview hg19]  TRPV3 [Mapview hg38]
OMIM607066   614594   616400   
Gene and transcription
Genbank (Entrez)AF514998 AJ487035 AK074032 AK092557 AK127330
RefSeq transcript (Entrez)NM_001258205 NM_145068
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPV3
Cluster EST : UnigeneHs.446255 [ NCBI ]
CGAP (NCI)Hs.446255
Alternative Splicing GalleryENSG00000167723
Gene ExpressionTRPV3 [ NCBI-GEO ]   TRPV3 [ EBI - ARRAY_EXPRESS ]   TRPV3 [ SEEK ]   TRPV3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPV3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162514
GTEX Portal (Tissue expression)TRPV3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET8
Splice isoforms : SwissVarQ8NET8
PhosPhoSitePlusQ8NET8
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ion_trans_dom    TRPV    TRPV1-4_channel    TRPV3_channel   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam12796    pfam00520   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)TRPV3
DMDM Disease mutations162514
Blocks (Seattle)TRPV3
SuperfamilyQ8NET8
Human Protein AtlasENSG00000167723
Peptide AtlasQ8NET8
HPRD06141
IPIIPI00329641   IPI00555580   IPI00555796   IPI00908531   IPI00645218   
Protein Interaction databases
DIP (DOE-UCLA)Q8NET8
IntAct (EBI)Q8NET8
FunCoupENSG00000167723
BioGRIDTRPV3
STRING (EMBL)TRPV3
ZODIACTRPV3
Ontologies - Pathways
QuickGOQ8NET8
Ontology : AmiGOcalcium channel activity  calcium channel activity  plasma membrane  integral component of plasma membrane  response to heat  negative regulation of hair cycle  receptor complex  calcium ion transmembrane transport  positive regulation of calcium ion import  
Ontology : EGO-EBIcalcium channel activity  calcium channel activity  plasma membrane  integral component of plasma membrane  response to heat  negative regulation of hair cycle  receptor complex  calcium ion transmembrane transport  positive regulation of calcium ion import  
NDEx NetworkTRPV3
Atlas of Cancer Signalling NetworkTRPV3
Wikipedia pathwaysTRPV3
Orthology - Evolution
OrthoDB162514
GeneTree (enSembl)ENSG00000167723
Phylogenetic Trees/Animal Genes : TreeFamTRPV3
HOVERGENQ8NET8
HOGENOMQ8NET8
Homologs : HomoloGeneTRPV3
Homology/Alignments : Family Browser (UCSC)TRPV3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRPV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRPV3
dbVarTRPV3
ClinVarTRPV3
1000_GenomesTRPV3 
Exome Variant ServerTRPV3
ExAC (Exome Aggregation Consortium)TRPV3 (select the gene name)
Genetic variants : HAPMAP162514
Genomic Variants (DGV)TRPV3 [DGVbeta]
DECIPHERTRPV3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRPV3 
Mutations
ICGC Data PortalTRPV3 
TCGA Data PortalTRPV3 
Broad Tumor PortalTRPV3
OASIS PortalTRPV3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRPV3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRPV3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch TRPV3
DgiDB (Drug Gene Interaction Database)TRPV3
DoCM (Curated mutations)TRPV3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRPV3 (select a term)
intoGenTRPV3
Cancer3DTRPV3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607066    614594    616400   
Orphanet23565    8652   
MedgenTRPV3
Genetic Testing Registry TRPV3
NextProtQ8NET8 [Medical]
TSGene162514
GENETestsTRPV3
Target ValidationTRPV3
Huge Navigator TRPV3 [HugePedia]
snp3D : Map Gene to Disease162514
BioCentury BCIQTRPV3
ClinGenTRPV3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162514
Chemical/Pharm GKB GenePA38481
Clinical trialTRPV3
Miscellaneous
canSAR (ICR)TRPV3 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPV3
EVEXTRPV3
GoPubMedTRPV3
iHOPTRPV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:03 CEST 2017

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