Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRPV3 (transient receptor potential cation channel subfamily V member 3)

Identity

Alias_namestransient receptor potential cation channel, subfamily V, member 3
Alias_symbol (synonym)VRL3
Other aliasFNEPPK2
OLMS
HGNC (Hugo) TRPV3
LocusID (NCBI) 162514
Atlas_Id 56156
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3510502 and ends at 3557995 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRPV3   18084
Cards
Entrez_Gene (NCBI)TRPV3  162514  transient receptor potential cation channel subfamily V member 3
AliasesFNEPPK2; OLMS; VRL3
GeneCards (Weizmann)TRPV3
Ensembl hg19 (Hinxton)ENSG00000167723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167723 [Gene_View]  ENSG00000167723 [Sequence]  chr17:3510502-3557995 [Contig_View]  TRPV3 [Vega]
ICGC DataPortalENSG00000167723
TCGA cBioPortalTRPV3
AceView (NCBI)TRPV3
Genatlas (Paris)TRPV3
WikiGenes162514
SOURCE (Princeton)TRPV3
Genetics Home Reference (NIH)TRPV3
Genomic and cartography
GoldenPath hg38 (UCSC)TRPV3  -     chr17:3510502-3557995 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPV3  -     17p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTRPV3 - 17p13.2 [CytoView hg19]  TRPV3 - 17p13.2 [CytoView hg38]
ImmunoBaseENSG00000167723
Mapping of homologs : NCBITRPV3 [Mapview hg19]  TRPV3 [Mapview hg38]
OMIM607066   614594   616400   
Gene and transcription
Genbank (Entrez)AF514998 AJ487035 AK074032 AK092557 AK127330
RefSeq transcript (Entrez)NM_001258205 NM_145068
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPV3
Alternative Splicing GalleryENSG00000167723
Gene ExpressionTRPV3 [ NCBI-GEO ]   TRPV3 [ EBI - ARRAY_EXPRESS ]   TRPV3 [ SEEK ]   TRPV3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPV3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)162514
GTEX Portal (Tissue expression)TRPV3
Human Protein AtlasENSG00000167723-TRPV3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPV3
DMDM Disease mutations162514
Blocks (Seattle)TRPV3
Human Protein Atlas [tissue]ENSG00000167723-TRPV3 [tissue]
HPRD06141
IPIIPI00329641   IPI00555580   IPI00555796   IPI00908531   IPI00645218   
Protein Interaction databases
FunCoupENSG00000167723
BioGRIDTRPV3
STRING (EMBL)TRPV3
ZODIACTRPV3
Ontologies - Pathways
Huge Navigator TRPV3 [HugePedia]
snp3D : Map Gene to Disease162514
BioCentury BCIQTRPV3
ClinGenTRPV3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162514
Chemical/Pharm GKB GenePA38481
Clinical trialTRPV3
Miscellaneous
canSAR (ICR)TRPV3 (select the gene name)
DataMed IndexTRPV3
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRPV3
EVEXTRPV3
GoPubMedTRPV3
iHOPTRPV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:34 CET 2020

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