Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TRPV4 (transient receptor potential cation channel subfamily V member 4)

Identity

Alias (NCBI)BCYM3
CMT2C
HMSN2C
OTRPC4
SMAL
SPSMA
SSQTL1
TRP12
VRL2
VROAC
HGNC (Hugo) TRPV4
HGNC Alias symbOTRPC4
TRP12
VROAC
VRL-2
VR-OAC
CMT2C
HGNC Alias nameosmosensitive transient receptor potential channel 4
HGNC Previous nametransient receptor potential cation channel, subfamily V, member 4
LocusID (NCBI) 59341
Atlas_Id 50819
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109783087 and ends at 109814827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRPV4   18083
LRG (Locus Reference Genomic)LRG_372
Cards
Entrez_Gene (NCBI)TRPV4    transient receptor potential cation channel subfamily V member 4
AliasesBCYM3; CMT2C; HMSN2C; OTRPC4; 
SMAL; SPSMA; SSQTL1; TRP12; VRL2; VROAC
GeneCards (Weizmann)TRPV4
Ensembl hg19 (Hinxton)ENSG00000111199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111199 [Gene_View]  ENSG00000111199 [Sequence]  chr12:109783087-109814827 [Contig_View]  TRPV4 [Vega]
ICGC DataPortalENSG00000111199
TCGA cBioPortalTRPV4
AceView (NCBI)TRPV4
Genatlas (Paris)TRPV4
SOURCE (Princeton)TRPV4
Genetics Home Reference (NIH)TRPV4
Genomic and cartography
GoldenPath hg38 (UCSC)TRPV4  -     chr12:109783087-109814827 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPV4  -     12q24.11   [Description]    (hg19-Feb_2009)
GoldenPathTRPV4 - 12q24.11 [CytoView hg19]  TRPV4 - 12q24.11 [CytoView hg38]
ImmunoBaseENSG00000111199
genome Data Viewer NCBITRPV4 [Mapview hg19]  
OMIM113500   156530   168400   181405   184095   184252   600175   605427   606071   606835   613508   617383   
Gene and transcription
Genbank (Entrez)AB032427 AB073669 AB100308 AF258465 AF263523
RefSeq transcript (Entrez)NM_001177428 NM_001177431 NM_001177433 NM_021625 NM_147204
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRPV4
Alternative Splicing GalleryENSG00000111199
Gene ExpressionTRPV4 [ NCBI-GEO ]   TRPV4 [ EBI - ARRAY_EXPRESS ]   TRPV4 [ SEEK ]   TRPV4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPV4 [ Firebrowse - Broad ]
GenevisibleExpression of TRPV4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59341
GTEX Portal (Tissue expression)TRPV4
Human Protein AtlasENSG00000111199-TRPV4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPV4
Blocks (Seattle)TRPV4
Human Protein Atlas [tissue]ENSG00000111199-TRPV4 [tissue]
HPRD05667
IPIIPI00168624   IPI00168926   IPI00555678   IPI00657947   IPI00853621   IPI00658012   IPI01018955   
Protein Interaction databases
BioGRIDTRPV4
STRING (EMBL)TRPV4
ZODIACTRPV4
Ontologies - Pathways
Litterature
PubMed236 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRPV4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:51:06 CET 2021
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