Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRPV4 (transient receptor potential cation channel subfamily V member 4)

Identity

Alias (NCBI)BCYM3
CMT2C
HMSN2C
OTRPC4
SMAL
SPSMA
SSQTL1
TRP12
VRL2
VROAC
HGNC (Hugo) TRPV4
HGNC Alias symbOTRPC4
TRP12
VROAC
VRL-2
VR-OAC
CMT2C
HGNC Alias nameosmosensitive transient receptor potential channel 4
HGNC Previous nametransient receptor potential cation channel, subfamily V, member 4
LocusID (NCBI) 59341
Atlas_Id 50819
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109783087 and ends at 109814827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRPV4   18083
LRG (Locus Reference Genomic)LRG_372
Cards
Entrez_Gene (NCBI)TRPV4    transient receptor potential cation channel subfamily V member 4
AliasesBCYM3; CMT2C; HMSN2C; OTRPC4; 
SMAL; SPSMA; SSQTL1; TRP12; VRL2; VROAC
GeneCards (Weizmann)TRPV4
Ensembl hg19 (Hinxton)ENSG00000111199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111199 [Gene_View]  ENSG00000111199 [Sequence]  chr12:109783087-109814827 [Contig_View]  TRPV4 [Vega]
ICGC DataPortalENSG00000111199
TCGA cBioPortalTRPV4
AceView (NCBI)TRPV4
Genatlas (Paris)TRPV4
SOURCE (Princeton)TRPV4
Genetics Home Reference (NIH)TRPV4
Genomic and cartography
GoldenPath hg38 (UCSC)TRPV4  -     chr12:109783087-109814827 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRPV4  -     12q24.11   [Description]    (hg19-Feb_2009)
GoldenPathTRPV4 - 12q24.11 [CytoView hg19]  TRPV4 - 12q24.11 [CytoView hg38]
ImmunoBaseENSG00000111199
Genome Data Viewer NCBITRPV4 [Mapview hg19]  
OMIM113500   156530   168400   181405   184095   184252   600175   605427   606071   606835   613508   617383   
Gene and transcription
Genbank (Entrez)AB032427 AB073669 AB100308 AF258465 AF263523
RefSeq transcript (Entrez)NM_001177428 NM_001177431 NM_001177433 NM_021625 NM_147204
Consensus coding sequences : CCDS (NCBI)TRPV4
Gene ExpressionTRPV4 [ NCBI-GEO ]   TRPV4 [ EBI - ARRAY_EXPRESS ]   TRPV4 [ SEEK ]   TRPV4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRPV4 [ Firebrowse - Broad ]
GenevisibleExpression of TRPV4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59341
GTEX Portal (Tissue expression)TRPV4
Human Protein AtlasENSG00000111199-TRPV4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRPV4
Human Protein Atlas [tissue]ENSG00000111199-TRPV4 [tissue]
HPRD05667
Protein Interaction databases
BioGRIDTRPV4
STRING (EMBL)TRPV4
ZODIACTRPV4
Ontologies - Pathways
Litterature
PubMed242 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRPV4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:33 CEST 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.