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TRUB1 (TruB pseudouridine synthase family member 1)

Identity

Alias_namesTruB pseudouridine (psi) synthase homolog 1 (E. coli)
TruB pseudouridine (psi) synthase family member 1
Alias_symbol (synonym)PUS4
Other alias
HGNC (Hugo) TRUB1
LocusID (NCBI) 142940
Atlas_Id 75215
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114938193 and ends at 114977680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAF1D (11q21) / TRUB1 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRUB1   16060
Cards
Entrez_Gene (NCBI)TRUB1  142940  TruB pseudouridine synthase family member 1
AliasesPUS4
GeneCards (Weizmann)TRUB1
Ensembl hg19 (Hinxton)ENSG00000165832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165832 [Gene_View]  chr10:114938193-114977680 [Contig_View]  TRUB1 [Vega]
ICGC DataPortalENSG00000165832
TCGA cBioPortalTRUB1
AceView (NCBI)TRUB1
Genatlas (Paris)TRUB1
WikiGenes142940
SOURCE (Princeton)TRUB1
Genetics Home Reference (NIH)TRUB1
Genomic and cartography
GoldenPath hg38 (UCSC)TRUB1  -     chr10:114938193-114977680 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRUB1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblTRUB1 - 10q25.3 [CytoView hg19]  TRUB1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBITRUB1 [Mapview hg19]  TRUB1 [Mapview hg38]
OMIM610726   
Gene and transcription
Genbank (Entrez)AF448144 AK026721 AK125554 AK223567 AK302800
RefSeq transcript (Entrez)NM_139169
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRUB1
Cluster EST : UnigeneHs.21187 [ NCBI ]
CGAP (NCI)Hs.21187
Alternative Splicing GalleryENSG00000165832
Gene ExpressionTRUB1 [ NCBI-GEO ]   TRUB1 [ EBI - ARRAY_EXPRESS ]   TRUB1 [ SEEK ]   TRUB1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRUB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142940
GTEX Portal (Tissue expression)TRUB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWH5
Splice isoforms : SwissVarQ8WWH5
PhosPhoSitePlusQ8WWH5
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_N    tRNA_psdUridine_synth_TruB   
Domain families : Pfam (Sanger)TruB_N (PF01509)   
Domain families : Pfam (NCBI)pfam01509   
Conserved Domain (NCBI)TRUB1
DMDM Disease mutations142940
Blocks (Seattle)TRUB1
SuperfamilyQ8WWH5
Human Protein AtlasENSG00000165832
Peptide AtlasQ8WWH5
HPRD18229
IPIIPI00103341   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWH5
IntAct (EBI)Q8WWH5
FunCoupENSG00000165832
BioGRIDTRUB1
STRING (EMBL)TRUB1
ZODIACTRUB1
Ontologies - Pathways
QuickGOQ8WWH5
Ontology : AmiGORNA binding  tRNA modification  pseudouridine synthase activity  mRNA pseudouridine synthesis  
Ontology : EGO-EBIRNA binding  tRNA modification  pseudouridine synthase activity  mRNA pseudouridine synthesis  
NDEx NetworkTRUB1
Atlas of Cancer Signalling NetworkTRUB1
Wikipedia pathwaysTRUB1
Orthology - Evolution
OrthoDB142940
GeneTree (enSembl)ENSG00000165832
Phylogenetic Trees/Animal Genes : TreeFamTRUB1
HOVERGENQ8WWH5
HOGENOMQ8WWH5
Homologs : HomoloGeneTRUB1
Homology/Alignments : Family Browser (UCSC)TRUB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRUB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRUB1
dbVarTRUB1
ClinVarTRUB1
1000_GenomesTRUB1 
Exome Variant ServerTRUB1
ExAC (Exome Aggregation Consortium)TRUB1 (select the gene name)
Genetic variants : HAPMAP142940
Genomic Variants (DGV)TRUB1 [DGVbeta]
DECIPHERTRUB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRUB1 
Mutations
ICGC Data PortalTRUB1 
TCGA Data PortalTRUB1 
Broad Tumor PortalTRUB1
OASIS PortalTRUB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRUB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRUB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRUB1
DgiDB (Drug Gene Interaction Database)TRUB1
DoCM (Curated mutations)TRUB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRUB1 (select a term)
intoGenTRUB1
Cancer3DTRUB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610726   
Orphanet
MedgenTRUB1
Genetic Testing Registry TRUB1
NextProtQ8WWH5 [Medical]
TSGene142940
GENETestsTRUB1
Target ValidationTRUB1
Huge Navigator TRUB1 [HugePedia]
snp3D : Map Gene to Disease142940
BioCentury BCIQTRUB1
ClinGenTRUB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142940
Chemical/Pharm GKB GenePA38086
Clinical trialTRUB1
Miscellaneous
canSAR (ICR)TRUB1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRUB1
EVEXTRUB1
GoPubMedTRUB1
iHOPTRUB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:18 CEST 2017

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