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TRUB2 (TruB pseudouridine synthase family member 2)

Identity

Alias_namesTruB pseudouridine (psi) synthase homolog 2 (E. coli)
TruB pseudouridine (psi) synthase family member 2
Alias_symbol (synonym)CLONE24922
Other alias
HGNC (Hugo) TRUB2
LocusID (NCBI) 26995
Atlas_Id 75216
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128309100 and ends at 128322780 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRUB2 (9q34.11) / EHD2 (19q13.33)TRUB2 (9q34.11) / KCNT1 (9q34.3)TRUB2 (9q34.11) / MRPL47 (3q26.33)
TRUB2 (9q34.11) / TAPBP (6p21.32)VAV2 (9q34.2) / TRUB2 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRUB2   17170
Cards
Entrez_Gene (NCBI)TRUB2  26995  TruB pseudouridine synthase family member 2
AliasesCLONE24922
GeneCards (Weizmann)TRUB2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:128309100-128322780 [Contig_View]  TRUB2 [Vega]
TCGA cBioPortalTRUB2
AceView (NCBI)TRUB2
Genatlas (Paris)TRUB2
WikiGenes26995
SOURCE (Princeton)TRUB2
Genetics Home Reference (NIH)TRUB2
Genomic and cartography
GoldenPath hg38 (UCSC)TRUB2  -     chr9:128309100-128322780 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRUB2  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblTRUB2 - 9q34.11 [CytoView hg19]  TRUB2 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBITRUB2 [Mapview hg19]  TRUB2 [Mapview hg38]
OMIM610727   
Gene and transcription
Genbank (Entrez)AF131848 AJ420462 AK001956 AK130008 AK301986
RefSeq transcript (Entrez)NM_001329861 NM_001329862 NM_001329863 NM_015679
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRUB2
Cluster EST : UnigeneHs.632685 [ NCBI ]
CGAP (NCI)Hs.632685
Gene ExpressionTRUB2 [ NCBI-GEO ]   TRUB2 [ EBI - ARRAY_EXPRESS ]   TRUB2 [ SEEK ]   TRUB2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRUB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26995
GTEX Portal (Tissue expression)TRUB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95900   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95900  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95900
Splice isoforms : SwissVarO95900
PhosPhoSitePlusO95900
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_N   
Domain families : Pfam (Sanger)TruB_N (PF01509)   
Domain families : Pfam (NCBI)pfam01509   
Conserved Domain (NCBI)TRUB2
DMDM Disease mutations26995
Blocks (Seattle)TRUB2
SuperfamilyO95900
Peptide AtlasO95900
HPRD18230
IPIIPI00024151   IPI01009255   
Protein Interaction databases
DIP (DOE-UCLA)O95900
IntAct (EBI)O95900
BioGRIDTRUB2
STRING (EMBL)TRUB2
ZODIACTRUB2
Ontologies - Pathways
QuickGOO95900
Ontology : AmiGOpseudouridine synthesis  RNA binding  cytosol  tRNA processing  pseudouridine synthase activity  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  cytosol  tRNA processing  pseudouridine synthase activity  
NDEx NetworkTRUB2
Atlas of Cancer Signalling NetworkTRUB2
Wikipedia pathwaysTRUB2
Orthology - Evolution
OrthoDB26995
Phylogenetic Trees/Animal Genes : TreeFamTRUB2
HOVERGENO95900
HOGENOMO95900
Homologs : HomoloGeneTRUB2
Homology/Alignments : Family Browser (UCSC)TRUB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRUB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRUB2
dbVarTRUB2
ClinVarTRUB2
1000_GenomesTRUB2 
Exome Variant ServerTRUB2
ExAC (Exome Aggregation Consortium)TRUB2 (select the gene name)
Genetic variants : HAPMAP26995
Genomic Variants (DGV)TRUB2 [DGVbeta]
DECIPHERTRUB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRUB2 
Mutations
ICGC Data PortalTRUB2 
TCGA Data PortalTRUB2 
Broad Tumor PortalTRUB2
OASIS PortalTRUB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRUB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRUB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRUB2
DgiDB (Drug Gene Interaction Database)TRUB2
DoCM (Curated mutations)TRUB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRUB2 (select a term)
intoGenTRUB2
Cancer3DTRUB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610727   
Orphanet
MedgenTRUB2
Genetic Testing Registry TRUB2
NextProtO95900 [Medical]
TSGene26995
GENETestsTRUB2
Target ValidationTRUB2
Huge Navigator TRUB2 [HugePedia]
snp3D : Map Gene to Disease26995
BioCentury BCIQTRUB2
ClinGenTRUB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26995
Chemical/Pharm GKB GenePA38209
Clinical trialTRUB2
Miscellaneous
canSAR (ICR)TRUB2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRUB2
EVEXTRUB2
GoPubMedTRUB2
iHOPTRUB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:41 CEST 2017

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