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TRUB2 (TruB pseudouridine synthase family member 2)

Identity

Alias (NCBI)CLONE24922
HGNC (Hugo) TRUB2
HGNC Alias symbCLONE24922
HGNC Previous nameTruB pseudouridine (psi) synthase homolog 2 (E. coli)
 TruB pseudouridine (psi) synthase family member 2
LocusID (NCBI) 26995
Atlas_Id 75216
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128305159 and ends at 128322447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRUB2 (9q34.11) / EHD2 (19q13.33)TRUB2 (9q34.11) / KCNT1 (9q34.3)TRUB2 (9q34.11) / MRPL47 (3q26.33)
TRUB2 (9q34.11) / TAPBP (6p21.32)VAV2 (9q34.2) / TRUB2 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRUB2   17170
Cards
Entrez_Gene (NCBI)TRUB2    TruB pseudouridine synthase family member 2
AliasesCLONE24922
GeneCards (Weizmann)TRUB2
Ensembl hg19 (Hinxton)ENSG00000167112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167112 [Gene_View]  ENSG00000167112 [Sequence]  chr9:128305159-128322447 [Contig_View]  TRUB2 [Vega]
ICGC DataPortalENSG00000167112
TCGA cBioPortalTRUB2
AceView (NCBI)TRUB2
Genatlas (Paris)TRUB2
SOURCE (Princeton)TRUB2
Genetics Home Reference (NIH)TRUB2
Genomic and cartography
GoldenPath hg38 (UCSC)TRUB2  -     chr9:128305159-128322447 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRUB2  -     9q34.11   [Description]    (hg19-Feb_2009)
GoldenPathTRUB2 - 9q34.11 [CytoView hg19]  TRUB2 - 9q34.11 [CytoView hg38]
ImmunoBaseENSG00000167112
Genome Data Viewer NCBITRUB2 [Mapview hg19]  
OMIM610727   
Gene and transcription
Genbank (Entrez)AF131848 AJ420462 AK001956 AK130008 AK301986
RefSeq transcript (Entrez)NM_001329861 NM_001329862 NM_001329863 NM_015679
Consensus coding sequences : CCDS (NCBI)TRUB2
Gene ExpressionTRUB2 [ NCBI-GEO ]   TRUB2 [ EBI - ARRAY_EXPRESS ]   TRUB2 [ SEEK ]   TRUB2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRUB2 [ Firebrowse - Broad ]
GenevisibleExpression of TRUB2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26995
GTEX Portal (Tissue expression)TRUB2
Human Protein AtlasENSG00000167112-TRUB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95900   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95900  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95900
PhosPhoSitePlusO95900
Domains : Interpro (EBI)PsdUridine_synth_cat_dom_sf    PsdUridine_synth_N    Trub2   
Domain families : Pfam (Sanger)TruB_N (PF01509)   
Domain families : Pfam (NCBI)pfam01509   
Conserved Domain (NCBI)TRUB2
SuperfamilyO95900
AlphaFold pdb e-kbO95900   
Human Protein Atlas [tissue]ENSG00000167112-TRUB2 [tissue]
HPRD18230
Protein Interaction databases
DIP (DOE-UCLA)O95900
IntAct (EBI)O95900
BioGRIDTRUB2
STRING (EMBL)TRUB2
ZODIACTRUB2
Ontologies - Pathways
QuickGOO95900
Ontology : AmiGORNA binding  mitochondrion  mitochondrial matrix  mRNA processing  pseudouridine synthase activity  ribonucleoprotein granule  positive regulation of mitochondrial translation  mRNA pseudouridine synthesis  
Ontology : EGO-EBIRNA binding  mitochondrion  mitochondrial matrix  mRNA processing  pseudouridine synthase activity  ribonucleoprotein granule  positive regulation of mitochondrial translation  mRNA pseudouridine synthesis  
NDEx NetworkTRUB2
Atlas of Cancer Signalling NetworkTRUB2
Wikipedia pathwaysTRUB2
Orthology - Evolution
OrthoDB26995
GeneTree (enSembl)ENSG00000167112
Phylogenetic Trees/Animal Genes : TreeFamTRUB2
Homologs : HomoloGeneTRUB2
Homology/Alignments : Family Browser (UCSC)TRUB2
Gene fusions - Rearrangements
Fusion : QuiverTRUB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRUB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRUB2
dbVarTRUB2
ClinVarTRUB2
MonarchTRUB2
1000_GenomesTRUB2 
Exome Variant ServerTRUB2
GNOMAD BrowserENSG00000167112
Varsome BrowserTRUB2
ACMGTRUB2 variants
VarityO95900
Genomic Variants (DGV)TRUB2 [DGVbeta]
DECIPHERTRUB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRUB2 
Mutations
ICGC Data PortalTRUB2 
TCGA Data PortalTRUB2 
Broad Tumor PortalTRUB2
OASIS PortalTRUB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRUB2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRUB2
Mutations and Diseases : HGMDTRUB2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRUB2
DgiDB (Drug Gene Interaction Database)TRUB2
DoCM (Curated mutations)TRUB2
CIViC (Clinical Interpretations of Variants in Cancer)TRUB2
Cancer3DTRUB2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610727   
Orphanet
DisGeNETTRUB2
MedgenTRUB2
Genetic Testing Registry TRUB2
NextProtO95900 [Medical]
GENETestsTRUB2
Target ValidationTRUB2
Huge Navigator TRUB2 [HugePedia]
ClinGenTRUB2
Clinical trials, drugs, therapy
MyCancerGenomeTRUB2
Protein Interactions : CTDTRUB2
Pharm GKB GenePA38209
PharosO95900
Clinical trialTRUB2
Miscellaneous
canSAR (ICR)TRUB2
HarmonizomeTRUB2
DataMed IndexTRUB2
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRUB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:05 CEST 2021

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