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TSC22D2 (TSC22 domain family member 2)

Identity

Alias (NCBI)TILZ4a
TILZ4b
TILZ4c
HGNC (Hugo) TSC22D2
HGNC Alias symbKIAA0669
TILZ4a
TILZ4b
TILZ4c
HGNC Previous nameTSC22 domain family, member 2
LocusID (NCBI) 9819
Atlas_Id 56772
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150408298 and ends at 150466420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSC22D2 (3q25.1) / ADCY5 (3q21.1)TSC22D2 (3q25.1) / FGF12 (3q28)TSC22D2 (3q25.1) / TSC22D2 (3q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSC22D2   29095
Cards
Entrez_Gene (NCBI)TSC22D2    TSC22 domain family member 2
AliasesTILZ4a; TILZ4b; TILZ4c
GeneCards (Weizmann)TSC22D2
Ensembl hg19 (Hinxton)ENSG00000196428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196428 [Gene_View]  ENSG00000196428 [Sequence]  chr3:150408298-150466420 [Contig_View]  TSC22D2 [Vega]
ICGC DataPortalENSG00000196428
TCGA cBioPortalTSC22D2
AceView (NCBI)TSC22D2
Genatlas (Paris)TSC22D2
SOURCE (Princeton)TSC22D2
Genetics Home Reference (NIH)TSC22D2
Genomic and cartography
GoldenPath hg38 (UCSC)TSC22D2  -     chr3:150408298-150466420 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSC22D2  -     3q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTSC22D2 - 3q25.1 [CytoView hg19]  TSC22D2 - 3q25.1 [CytoView hg38]
ImmunoBaseENSG00000196428
Genome Data Viewer NCBITSC22D2 [Mapview hg19]  
OMIM617724   
Gene and transcription
Genbank (Entrez)AA040291 AB014569 AF201290 AF201291 AF201292
RefSeq transcript (Entrez)NM_001303264 NM_014779
Consensus coding sequences : CCDS (NCBI)TSC22D2
Gene ExpressionTSC22D2 [ NCBI-GEO ]   TSC22D2 [ EBI - ARRAY_EXPRESS ]   TSC22D2 [ SEEK ]   TSC22D2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSC22D2 [ Firebrowse - Broad ]
GenevisibleExpression of TSC22D2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9819
GTEX Portal (Tissue expression)TSC22D2
Human Protein AtlasENSG00000196428-TSC22D2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75157   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75157
PhosPhoSitePlusO75157
Domaine pattern : Prosite (Expaxy)TSC22 (PS01289)   
Domains : Interpro (EBI)TSC-22_Dip_Bun   
Domain families : Pfam (Sanger)TSC22 (PF01166)   
Domain families : Pfam (NCBI)pfam01166   
Conserved Domain (NCBI)TSC22D2
SuperfamilyO75157
AlphaFold pdb e-kbO75157   
Human Protein Atlas [tissue]ENSG00000196428-TSC22D2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O75157
IntAct (EBI)O75157
BioGRIDTSC22D2
STRING (EMBL)TSC22D2
ZODIACTSC22D2
Ontologies - Pathways
QuickGOO75157
Ontology : AmiGOregulation of transcription by RNA polymerase II  response to osmotic stress  
Ontology : EGO-EBIregulation of transcription by RNA polymerase II  response to osmotic stress  
NDEx NetworkTSC22D2
Atlas of Cancer Signalling NetworkTSC22D2
Wikipedia pathwaysTSC22D2
Orthology - Evolution
OrthoDB9819
GeneTree (enSembl)ENSG00000196428
Phylogenetic Trees/Animal Genes : TreeFamTSC22D2
Homologs : HomoloGeneTSC22D2
Homology/Alignments : Family Browser (UCSC)TSC22D2
Gene fusions - Rearrangements
Fusion : QuiverTSC22D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSC22D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSC22D2
dbVarTSC22D2
ClinVarTSC22D2
MonarchTSC22D2
1000_GenomesTSC22D2 
Exome Variant ServerTSC22D2
GNOMAD BrowserENSG00000196428
Varsome BrowserTSC22D2
ACMGTSC22D2 variants
VarityO75157
Genomic Variants (DGV)TSC22D2 [DGVbeta]
DECIPHERTSC22D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSC22D2 
Mutations
ICGC Data PortalTSC22D2 
TCGA Data PortalTSC22D2 
Broad Tumor PortalTSC22D2
OASIS PortalTSC22D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSC22D2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSC22D2
Mutations and Diseases : HGMDTSC22D2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSC22D2
DgiDB (Drug Gene Interaction Database)TSC22D2
DoCM (Curated mutations)TSC22D2
CIViC (Clinical Interpretations of Variants in Cancer)TSC22D2
Cancer3DTSC22D2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617724   
Orphanet
DisGeNETTSC22D2
MedgenTSC22D2
Genetic Testing Registry TSC22D2
NextProtO75157 [Medical]
GENETestsTSC22D2
Target ValidationTSC22D2
Huge Navigator TSC22D2 [HugePedia]
ClinGenTSC22D2
Clinical trials, drugs, therapy
MyCancerGenomeTSC22D2
Protein Interactions : CTDTSC22D2
Pharm GKB GenePA142670697
PharosO75157
Clinical trialTSC22D2
Miscellaneous
canSAR (ICR)TSC22D2
HarmonizomeTSC22D2
DataMed IndexTSC22D2
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSC22D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:34 CEST 2021

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