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TSC22D2 (TSC22 domain family, member 2)

Identity

Alias_namesTSC22 domain family, member 2
Alias_symbol (synonym)KIAA0669
TILZ4a
TILZ4b
TILZ4c
Other alias
HGNC (Hugo) TSC22D2
LocusID (NCBI) 9819
Atlas_Id 75220
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150126122 and ends at 150177905 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSC22D2 (3q25.1) / ADCY5 (3q21.1)TSC22D2 (3q25.1) / FGF12 (3q28)TSC22D2 (3q25.1) / TSC22D2 (3q25.1)
TSC22D2 FGF12TSC22D2 ADCY5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSC22D2   29095
Cards
Entrez_Gene (NCBI)TSC22D2  9819  TSC22 domain family, member 2
AliasesTILZ4a; TILZ4b; TILZ4c
GeneCards (Weizmann)TSC22D2
Ensembl hg19 (Hinxton) [Gene_View]  chr3:150126122-150177905 [Contig_View]  TSC22D2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:150126122-150177905 [Contig_View]  TSC22D2 [Vega]
TCGA cBioPortalTSC22D2
AceView (NCBI)TSC22D2
Genatlas (Paris)TSC22D2
WikiGenes9819
SOURCE (Princeton)TSC22D2
Genetics Home Reference (NIH)TSC22D2
Genomic and cartography
GoldenPath hg19 (UCSC)TSC22D2  -     chr3:150126122-150177905 +  3q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSC22D2  -     3q25.1   [Description]    (hg38-Dec_2013)
EnsemblTSC22D2 - 3q25.1 [CytoView hg19]  TSC22D2 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBITSC22D2 [Mapview hg19]  TSC22D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA040291 AB014569 AF201290 AF201291 AF201292
RefSeq transcript (Entrez)NM_001303264 NM_014779
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TSC22D2
Cluster EST : UnigeneHs.730710 [ NCBI ]
CGAP (NCI)Hs.730710
Gene ExpressionTSC22D2 [ NCBI-GEO ]   TSC22D2 [ EBI - ARRAY_EXPRESS ]   TSC22D2 [ SEEK ]   TSC22D2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSC22D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9819
GTEX Portal (Tissue expression)TSC22D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75157   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75157
Splice isoforms : SwissVarO75157
PhosPhoSitePlusO75157
Domaine pattern : Prosite (Expaxy)TSC22 (PS01289)   
Domains : Interpro (EBI)TSC-22_Dip_Bun   
Domain families : Pfam (Sanger)TSC22 (PF01166)   
Domain families : Pfam (NCBI)pfam01166   
Domain structure : Prodom (Prabi Lyon)TSC-22_Dip_Bun (PD007152)   
Conserved Domain (NCBI)TSC22D2
DMDM Disease mutations9819
Blocks (Seattle)TSC22D2
SuperfamilyO75157
Peptide AtlasO75157
HPRD11101
IPIIPI00477806   IPI00164935   IPI00945219   IPI00744818   IPI00946546   IPI00946244   
Protein Interaction databases
DIP (DOE-UCLA)O75157
IntAct (EBI)O75157
BioGRIDTSC22D2
STRING (EMBL)TSC22D2
ZODIACTSC22D2
Ontologies - Pathways
QuickGOO75157
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  regulation of transcription, DNA-templated  response to osmotic stress  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  regulation of transcription, DNA-templated  response to osmotic stress  
NDEx NetworkTSC22D2
Atlas of Cancer Signalling NetworkTSC22D2
Wikipedia pathwaysTSC22D2
Orthology - Evolution
OrthoDB9819
Phylogenetic Trees/Animal Genes : TreeFamTSC22D2
HOVERGENO75157
HOGENOMO75157
Homologs : HomoloGeneTSC22D2
Homology/Alignments : Family Browser (UCSC)TSC22D2
Gene fusions - Rearrangements
Fusion: TCGATSC22D2 FGF12
Fusion: TCGATSC22D2 ADCY5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSC22D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSC22D2
dbVarTSC22D2
ClinVarTSC22D2
1000_GenomesTSC22D2 
Exome Variant ServerTSC22D2
ExAC (Exome Aggregation Consortium)TSC22D2 (select the gene name)
Genetic variants : HAPMAP9819
Genomic Variants (DGV)TSC22D2 [DGVbeta]
DECIPHER (Syndromes)3:150126122-150177905  
CONAN: Copy Number AnalysisTSC22D2 
Mutations
ICGC Data PortalTSC22D2 
TCGA Data PortalTSC22D2 
Broad Tumor PortalTSC22D2
OASIS PortalTSC22D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSC22D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSC22D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSC22D2
DgiDB (Drug Gene Interaction Database)TSC22D2
DoCM (Curated mutations)TSC22D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSC22D2 (select a term)
intoGenTSC22D2
Cancer3DTSC22D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSC22D2
Genetic Testing Registry TSC22D2
NextProtO75157 [Medical]
TSGene9819
GENETestsTSC22D2
Huge Navigator TSC22D2 [HugePedia]
snp3D : Map Gene to Disease9819
BioCentury BCIQTSC22D2
ClinGenTSC22D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9819
Chemical/Pharm GKB GenePA142670697
Clinical trialTSC22D2
Miscellaneous
canSAR (ICR)TSC22D2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSC22D2
EVEXTSC22D2
GoPubMedTSC22D2
iHOPTSC22D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:55 CET 2017

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