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TSC22D4 (TSC22 domain family member 4)

Identity

Alias_namesTSC22 domain family
Alias_symbol (synonym)THG-1
TILZ2
Other aliasTHG1
HGNC (Hugo) TSC22D4
LocusID (NCBI) 81628
Atlas_Id 54727
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100466519 and ends at 100479279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSC22D4 (7q22.1) / C7orf61 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSC22D4   21696
Cards
Entrez_Gene (NCBI)TSC22D4  81628  TSC22 domain family member 4
AliasesTHG-1; THG1; TILZ2
GeneCards (Weizmann)TSC22D4
Ensembl hg19 (Hinxton)ENSG00000166925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166925 [Gene_View]  chr7:100466519-100479279 [Contig_View]  TSC22D4 [Vega]
ICGC DataPortalENSG00000166925
TCGA cBioPortalTSC22D4
AceView (NCBI)TSC22D4
Genatlas (Paris)TSC22D4
WikiGenes81628
SOURCE (Princeton)TSC22D4
Genetics Home Reference (NIH)TSC22D4
Genomic and cartography
GoldenPath hg38 (UCSC)TSC22D4  -     chr7:100466519-100479279 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSC22D4  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblTSC22D4 - 7q22.1 [CytoView hg19]  TSC22D4 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBITSC22D4 [Mapview hg19]  TSC22D4 [Mapview hg38]
OMIM611914   
Gene and transcription
Genbank (Entrez)AA991748 AJ133115 AK296580 AK297702 AK310800
RefSeq transcript (Entrez)NM_001303043 NM_030935
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSC22D4
Cluster EST : UnigeneHs.469798 [ NCBI ]
CGAP (NCI)Hs.469798
Alternative Splicing GalleryENSG00000166925
Gene ExpressionTSC22D4 [ NCBI-GEO ]   TSC22D4 [ EBI - ARRAY_EXPRESS ]   TSC22D4 [ SEEK ]   TSC22D4 [ MEM ]
Gene Expression Viewer (FireBrowse)TSC22D4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81628
GTEX Portal (Tissue expression)TSC22D4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3Q8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3Q8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3Q8
Splice isoforms : SwissVarQ9Y3Q8
PhosPhoSitePlusQ9Y3Q8
Domaine pattern : Prosite (Expaxy)TSC22 (PS01289)   
Domains : Interpro (EBI)TSC-22_Dip_Bun   
Domain families : Pfam (Sanger)TSC22 (PF01166)   
Domain families : Pfam (NCBI)pfam01166   
Domain structure : Prodom (Prabi Lyon)TSC-22_Dip_Bun (PD007152)   
Conserved Domain (NCBI)TSC22D4
DMDM Disease mutations81628
Blocks (Seattle)TSC22D4
SuperfamilyQ9Y3Q8
Human Protein AtlasENSG00000166925
Peptide AtlasQ9Y3Q8
HPRD18231
IPIIPI00000171   IPI00852894   IPI00852963   IPI00853051   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3Q8
IntAct (EBI)Q9Y3Q8
FunCoupENSG00000166925
BioGRIDTSC22D4
STRING (EMBL)TSC22D4
ZODIACTSC22D4
Ontologies - Pathways
QuickGOQ9Y3Q8
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  negative regulation of transcription, DNA-templated  negative regulation of activation-induced cell death of T cells  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  negative regulation of transcription, DNA-templated  negative regulation of activation-induced cell death of T cells  
NDEx NetworkTSC22D4
Atlas of Cancer Signalling NetworkTSC22D4
Wikipedia pathwaysTSC22D4
Orthology - Evolution
OrthoDB81628
GeneTree (enSembl)ENSG00000166925
Phylogenetic Trees/Animal Genes : TreeFamTSC22D4
HOVERGENQ9Y3Q8
HOGENOMQ9Y3Q8
Homologs : HomoloGeneTSC22D4
Homology/Alignments : Family Browser (UCSC)TSC22D4
Gene fusions - Rearrangements
Fusion : MitelmanTSC22D4/C7orf61 [7q22.1/7q22.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSC22D4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSC22D4
dbVarTSC22D4
ClinVarTSC22D4
1000_GenomesTSC22D4 
Exome Variant ServerTSC22D4
ExAC (Exome Aggregation Consortium)TSC22D4 (select the gene name)
Genetic variants : HAPMAP81628
Genomic Variants (DGV)TSC22D4 [DGVbeta]
DECIPHERTSC22D4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSC22D4 
Mutations
ICGC Data PortalTSC22D4 
TCGA Data PortalTSC22D4 
Broad Tumor PortalTSC22D4
OASIS PortalTSC22D4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSC22D4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSC22D4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSC22D4
DgiDB (Drug Gene Interaction Database)TSC22D4
DoCM (Curated mutations)TSC22D4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSC22D4 (select a term)
intoGenTSC22D4
Cancer3DTSC22D4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611914   
Orphanet
MedgenTSC22D4
Genetic Testing Registry TSC22D4
NextProtQ9Y3Q8 [Medical]
TSGene81628
GENETestsTSC22D4
Target ValidationTSC22D4
Huge Navigator TSC22D4 [HugePedia]
snp3D : Map Gene to Disease81628
BioCentury BCIQTSC22D4
ClinGenTSC22D4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81628
Chemical/Pharm GKB GenePA142670698
Clinical trialTSC22D4
Miscellaneous
canSAR (ICR)TSC22D4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSC22D4
EVEXTSC22D4
GoPubMedTSC22D4
iHOPTSC22D4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:04 CEST 2017

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