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TSGA10 (testis specific 10)

Identity

Alias (NCBI)CEP4L
CT79
SPGF26
HGNC (Hugo) TSGA10
HGNC Alias symbCEP4L
CT79
HGNC Alias namecancer/testis antigen 79
LocusID (NCBI) 80705
Atlas_Id 43616
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 98997261 and ends at 99141703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTR2 (2p14) / TSGA10 (2q11.2)CHN1 (2q31.1) / TSGA10 (2q11.2)KANSL3 (2q11.2) / TSGA10 (2q11.2)
ACTR2 2p14 / TSGA10 2q11.2CHN1 2q31.1 / TSGA10 2q11.2KIAA1310 TSGA10 2q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSGA10   14927
Cards
Entrez_Gene (NCBI)TSGA10    testis specific 10
AliasesCEP4L; CT79; SPGF26
GeneCards (Weizmann)TSGA10
Ensembl hg19 (Hinxton)ENSG00000135951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135951 [Gene_View]  ENSG00000135951 [Sequence]  chr2:98997261-99141703 [Contig_View]  TSGA10 [Vega]
ICGC DataPortalENSG00000135951
TCGA cBioPortalTSGA10
AceView (NCBI)TSGA10
Genatlas (Paris)TSGA10
SOURCE (Princeton)TSGA10
Genetics Home Reference (NIH)TSGA10
Genomic and cartography
GoldenPath hg38 (UCSC)TSGA10  -     chr2:98997261-99141703 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSGA10  -     2q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTSGA10 - 2q11.2 [CytoView hg19]  TSGA10 - 2q11.2 [CytoView hg38]
ImmunoBaseENSG00000135951
Genome Data Viewer NCBITSGA10 [Mapview hg19]  
OMIM607166   617961   
Gene and transcription
Genbank (Entrez)AF254756 AK094208 AK304328 AK313354 AY014284
RefSeq transcript (Entrez)NM_001349012 NM_001349013 NM_001349014 NM_025244 NM_182911
Consensus coding sequences : CCDS (NCBI)TSGA10
Gene ExpressionTSGA10 [ NCBI-GEO ]   TSGA10 [ EBI - ARRAY_EXPRESS ]   TSGA10 [ SEEK ]   TSGA10 [ MEM ]
Gene Expression Viewer (FireBrowse)TSGA10 [ Firebrowse - Broad ]
GenevisibleExpression of TSGA10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80705
GTEX Portal (Tissue expression)TSGA10
Human Protein AtlasENSG00000135951-TSGA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZW7
PhosPhoSitePlusQ9BZW7
Domains : Interpro (EBI)TSGA10   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSGA10
SuperfamilyQ9BZW7
AlphaFold pdb e-kbQ9BZW7   
Human Protein Atlas [tissue]ENSG00000135951-TSGA10 [tissue]
HPRD06202
Protein Interaction databases
DIP (DOE-UCLA)Q9BZW7
IntAct (EBI)Q9BZW7
BioGRIDTSGA10
STRING (EMBL)TSGA10
ZODIACTSGA10
Ontologies - Pathways
QuickGOQ9BZW7
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytoplasm  centriole  spermatogenesis  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytoplasm  centriole  spermatogenesis  
NDEx NetworkTSGA10
Atlas of Cancer Signalling NetworkTSGA10
Wikipedia pathwaysTSGA10
Orthology - Evolution
OrthoDB80705
GeneTree (enSembl)ENSG00000135951
Phylogenetic Trees/Animal Genes : TreeFamTSGA10
Homologs : HomoloGeneTSGA10
Homology/Alignments : Family Browser (UCSC)TSGA10
Gene fusions - Rearrangements
Fusion : MitelmanACTR2/TSGA10 [2p14/2q11.2]  
Fusion : MitelmanCHN1/TSGA10 [2q31.1/2q11.2]  
Fusion : MitelmanKANSL3/TSGA10 [2q11.2/2q11.2]  
Fusion : QuiverTSGA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSGA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSGA10
dbVarTSGA10
ClinVarTSGA10
MonarchTSGA10
1000_GenomesTSGA10 
Exome Variant ServerTSGA10
GNOMAD BrowserENSG00000135951
Varsome BrowserTSGA10
ACMGTSGA10 variants
VarityQ9BZW7
Genomic Variants (DGV)TSGA10 [DGVbeta]
DECIPHERTSGA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSGA10 
Mutations
ICGC Data PortalTSGA10 
TCGA Data PortalTSGA10 
Broad Tumor PortalTSGA10
OASIS PortalTSGA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSGA10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSGA10
Mutations and Diseases : HGMDTSGA10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSGA10
DgiDB (Drug Gene Interaction Database)TSGA10
DoCM (Curated mutations)TSGA10
CIViC (Clinical Interpretations of Variants in Cancer)TSGA10
Cancer3DTSGA10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607166    617961   
Orphanet
DisGeNETTSGA10
MedgenTSGA10
Genetic Testing Registry TSGA10
NextProtQ9BZW7 [Medical]
GENETestsTSGA10
Target ValidationTSGA10
Huge Navigator TSGA10 [HugePedia]
ClinGenTSGA10
Clinical trials, drugs, therapy
MyCancerGenomeTSGA10
Protein Interactions : CTDTSGA10
Pharm GKB GenePA37933
PharosQ9BZW7
Clinical trialTSGA10
Miscellaneous
canSAR (ICR)TSGA10
HarmonizomeTSGA10
DataMed IndexTSGA10
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSGA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:35 CEST 2021

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