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TSGA10IP (testis specific 10 interacting protein)

Identity

Alias_symbol (synonym)FLJ32880
FAM161C
Other alias
HGNC (Hugo) TSGA10IP
LocusID (NCBI) 254187
Atlas_Id 75225
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65945644 and ends at 65959963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSGA10IP   26555
Cards
Entrez_Gene (NCBI)TSGA10IP  254187  testis specific 10 interacting protein
AliasesFAM161C
GeneCards (Weizmann)TSGA10IP
Ensembl hg19 (Hinxton)ENSG00000175513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175513 [Gene_View]  chr11:65945644-65959963 [Contig_View]  TSGA10IP [Vega]
ICGC DataPortalENSG00000175513
TCGA cBioPortalTSGA10IP
AceView (NCBI)TSGA10IP
Genatlas (Paris)TSGA10IP
WikiGenes254187
SOURCE (Princeton)TSGA10IP
Genetics Home Reference (NIH)TSGA10IP
Genomic and cartography
GoldenPath hg38 (UCSC)TSGA10IP  -     chr11:65945644-65959963 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSGA10IP  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblTSGA10IP - 11q13.1 [CytoView hg19]  TSGA10IP - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBITSGA10IP [Mapview hg19]  TSGA10IP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057442 BC104021 BC104022 BC104023
RefSeq transcript (Entrez)NM_152762
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSGA10IP
Cluster EST : UnigeneHs.350671 [ NCBI ]
CGAP (NCI)Hs.350671
Alternative Splicing GalleryENSG00000175513
Gene ExpressionTSGA10IP [ NCBI-GEO ]   TSGA10IP [ EBI - ARRAY_EXPRESS ]   TSGA10IP [ SEEK ]   TSGA10IP [ MEM ]
Gene Expression Viewer (FireBrowse)TSGA10IP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254187
GTEX Portal (Tissue expression)TSGA10IP
Human Protein AtlasENSG00000175513-TSGA10IP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY00
Splice isoforms : SwissVarQ3SY00
PhosPhoSitePlusQ3SY00
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSGA10IP
DMDM Disease mutations254187
Blocks (Seattle)TSGA10IP
SuperfamilyQ3SY00
Human Protein Atlas [tissue]ENSG00000175513-TSGA10IP [tissue]
Peptide AtlasQ3SY00
HPRD08147
IPIIPI00065223   IPI00890830   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY00
IntAct (EBI)Q3SY00
FunCoupENSG00000175513
BioGRIDTSGA10IP
STRING (EMBL)TSGA10IP
ZODIACTSGA10IP
Ontologies - Pathways
QuickGOQ3SY00
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTSGA10IP
Atlas of Cancer Signalling NetworkTSGA10IP
Wikipedia pathwaysTSGA10IP
Orthology - Evolution
OrthoDB254187
GeneTree (enSembl)ENSG00000175513
Phylogenetic Trees/Animal Genes : TreeFamTSGA10IP
HOVERGENQ3SY00
HOGENOMQ3SY00
Homologs : HomoloGeneTSGA10IP
Homology/Alignments : Family Browser (UCSC)TSGA10IP
Gene fusions - Rearrangements
Fusion: Tumor Portal TSGA10IP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSGA10IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSGA10IP
dbVarTSGA10IP
ClinVarTSGA10IP
1000_GenomesTSGA10IP 
Exome Variant ServerTSGA10IP
ExAC (Exome Aggregation Consortium)ENSG00000175513
GNOMAD BrowserENSG00000175513
Genetic variants : HAPMAP254187
Genomic Variants (DGV)TSGA10IP [DGVbeta]
DECIPHERTSGA10IP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSGA10IP 
Mutations
ICGC Data PortalTSGA10IP 
TCGA Data PortalTSGA10IP 
Broad Tumor PortalTSGA10IP
OASIS PortalTSGA10IP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSGA10IP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSGA10IP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSGA10IP
DgiDB (Drug Gene Interaction Database)TSGA10IP
DoCM (Curated mutations)TSGA10IP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSGA10IP (select a term)
intoGenTSGA10IP
Cancer3DTSGA10IP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSGA10IP
Genetic Testing Registry TSGA10IP
NextProtQ3SY00 [Medical]
TSGene254187
GENETestsTSGA10IP
Target ValidationTSGA10IP
Huge Navigator TSGA10IP [HugePedia]
snp3D : Map Gene to Disease254187
BioCentury BCIQTSGA10IP
ClinGenTSGA10IP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254187
Chemical/Pharm GKB GenePA134983361
Clinical trialTSGA10IP
Miscellaneous
canSAR (ICR)TSGA10IP (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSGA10IP
EVEXTSGA10IP
GoPubMedTSGA10IP
iHOPTSGA10IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:12 CET 2017

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