Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSGA13 (testis specific 13)

Identity

Other alias-
HGNC (Hugo) TSGA13
LocusID (NCBI) 114960
Atlas_Id 56613
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 130353486 and ends at 130372268 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSGA13   12369
Cards
Entrez_Gene (NCBI)TSGA13  114960  testis specific 13
Aliases
GeneCards (Weizmann)TSGA13
Ensembl hg19 (Hinxton)ENSG00000213265 [Gene_View]  chr7:130353486-130372268 [Contig_View]  TSGA13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213265 [Gene_View]  chr7:130353486-130372268 [Contig_View]  TSGA13 [Vega]
ICGC DataPortalENSG00000213265
TCGA cBioPortalTSGA13
AceView (NCBI)TSGA13
Genatlas (Paris)TSGA13
WikiGenes114960
SOURCE (Princeton)TSGA13
Genetics Home Reference (NIH)TSGA13
Genomic and cartography
GoldenPath hg19 (UCSC)TSGA13  -     chr7:130353486-130372268 -  7q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSGA13  -     7q32.2   [Description]    (hg38-Dec_2013)
EnsemblTSGA13 - 7q32.2 [CytoView hg19]  TSGA13 - 7q32.2 [CytoView hg38]
Mapping of homologs : NCBITSGA13 [Mapview hg19]  TSGA13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001304968 NM_052933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSGA13
Cluster EST : UnigeneHs.592266 [ NCBI ]
CGAP (NCI)Hs.592266
Alternative Splicing GalleryENSG00000213265
Gene ExpressionTSGA13 [ NCBI-GEO ]   TSGA13 [ EBI - ARRAY_EXPRESS ]   TSGA13 [ SEEK ]   TSGA13 [ MEM ]
Gene Expression Viewer (FireBrowse)TSGA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114960
GTEX Portal (Tissue expression)TSGA13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PP4
Splice isoforms : SwissVarQ96PP4
PhosPhoSitePlusQ96PP4
Domains : Interpro (EBI)TSGA13   
Domain families : Pfam (Sanger)TSGA13 (PF14994)   
Domain families : Pfam (NCBI)pfam14994   
Conserved Domain (NCBI)TSGA13
DMDM Disease mutations114960
Blocks (Seattle)TSGA13
SuperfamilyQ96PP4
Human Protein AtlasENSG00000213265
Peptide AtlasQ96PP4
HPRD11650
IPIIPI00069823   IPI00925663   IPI00925953   IPI00926076   
Protein Interaction databases
DIP (DOE-UCLA)Q96PP4
IntAct (EBI)Q96PP4
FunCoupENSG00000213265
BioGRIDTSGA13
STRING (EMBL)TSGA13
ZODIACTSGA13
Ontologies - Pathways
QuickGOQ96PP4
Ontology : AmiGOpositive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIpositive regulation of protein targeting to mitochondrion  
NDEx NetworkTSGA13
Atlas of Cancer Signalling NetworkTSGA13
Wikipedia pathwaysTSGA13
Orthology - Evolution
OrthoDB114960
GeneTree (enSembl)ENSG00000213265
Phylogenetic Trees/Animal Genes : TreeFamTSGA13
HOVERGENQ96PP4
HOGENOMQ96PP4
Homologs : HomoloGeneTSGA13
Homology/Alignments : Family Browser (UCSC)TSGA13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSGA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSGA13
dbVarTSGA13
ClinVarTSGA13
1000_GenomesTSGA13 
Exome Variant ServerTSGA13
ExAC (Exome Aggregation Consortium)TSGA13 (select the gene name)
Genetic variants : HAPMAP114960
Genomic Variants (DGV)TSGA13 [DGVbeta]
DECIPHER (Syndromes)7:130353486-130372268  ENSG00000213265
CONAN: Copy Number AnalysisTSGA13 
Mutations
ICGC Data PortalTSGA13 
TCGA Data PortalTSGA13 
Broad Tumor PortalTSGA13
OASIS PortalTSGA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSGA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSGA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSGA13
DgiDB (Drug Gene Interaction Database)TSGA13
DoCM (Curated mutations)TSGA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSGA13 (select a term)
intoGenTSGA13
Cancer3DTSGA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSGA13
Genetic Testing Registry TSGA13
NextProtQ96PP4 [Medical]
TSGene114960
GENETestsTSGA13
Huge Navigator TSGA13 [HugePedia]
snp3D : Map Gene to Disease114960
BioCentury BCIQTSGA13
ClinGenTSGA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114960
Chemical/Pharm GKB GenePA37038
Clinical trialTSGA13
Miscellaneous
canSAR (ICR)TSGA13 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSGA13
EVEXTSGA13
GoPubMedTSGA13
iHOPTSGA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:32:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.