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TSHB (thyroid stimulating hormone, beta)

Identity

Other namesTSH-B
TSH-BETA
HGNC (Hugo) TSHB
LocusID (NCBI) 7252
Location 1p13.2
Location_base_pair Starts at 115572445 and ends at 115576930 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TSHB   12372
Cards
Entrez_Gene (NCBI)TSHB  7252  thyroid stimulating hormone, beta
GeneCards (Weizmann)TSHB
Ensembl (Hinxton)ENSG00000134200 [Gene_View]  chr1:115572445-115576930 [Contig_View]  TSHB [Vega]
ICGC DataPortalENSG00000134200
cBioPortalTSHB
AceView (NCBI)TSHB
Genatlas (Paris)TSHB
WikiGenes7252
SOURCE (Princeton)NM_000549 NM_001277991
Genomic and cartography
GoldenPath (UCSC)TSHB  -  1p13.2   chr1:115572445-115576930 +  1p13.2   [Description]    (hg19-Feb_2009)
EnsemblTSHB - 1p13.2 [CytoView]
Mapping of homologs : NCBITSHB [Mapview]
OMIM188540   275100   
Gene and transcription
Genbank (Entrez)BC069298 HQ448420 S51112
RefSeq transcript (Entrez)NM_000549 NM_001277991
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_015891 NT_032977 NW_001838594 NW_004929290
Consensus coding sequences : CCDS (NCBI)TSHB
Cluster EST : UnigeneHs.406687 [ NCBI ]
CGAP (NCI)Hs.406687
Alternative Splicing : Fast-db (Paris)GSHG0000836
Alternative Splicing GalleryENSG00000134200
Gene ExpressionTSHB [ NCBI-GEO ]     TSHB [ SEEK ]   TSHB [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01222 (Uniprot)
NextProtP01222  [Medical]
With graphics : InterProP01222
Splice isoforms : SwissVarP01222 (Swissvar)
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine [organisation]   Glyco_hormone_CN [organisation]   Gonadotropin_bsu [organisation]   Gonadotropin_bsu_CS [organisation]  
Related proteins : CluSTrP01222
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
DMDM Disease mutations7252
Blocks (Seattle)P01222
Human Protein AtlasENSG00000134200 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP01222
HPRD11766
IPIIPI00000851   IPI00745707   
Protein Interaction databases
DIP (DOE-UCLA)P01222
IntAct (EBI)P01222
FunCoupENSG00000134200
BioGRIDTSHB
InParanoidP01222
Interologous Interaction database P01222
IntegromeDBTSHB
STRING (EMBL)TSHB
Ontologies - Pathways
Ontology : AmiGOhormone activity  extracellular region  G-protein coupled receptor signaling pathway  cell-cell signaling  anatomical structure morphogenesis  peptide hormone processing  response to vitamin A  response to estrogen  cellular protein metabolic process  response to calcium ion  
Ontology : EGO-EBIhormone activity  extracellular region  G-protein coupled receptor signaling pathway  cell-cell signaling  anatomical structure morphogenesis  peptide hormone processing  response to vitamin A  response to estrogen  cellular protein metabolic process  response to calcium ion  
Pathways : KEGGNeuroactive ligand-receptor interaction    Thyroid hormone synthesis    Autoimmune thyroid disease   
Protein Interaction DatabaseTSHB
Wikipedia pathwaysTSHB
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSHB
snp3D : Map Gene to Disease7252
SNP (GeneSNP Utah)TSHB
SNP : HGBaseTSHB
Genetic variants : HAPMAPTSHB
Exome VariantTSHB
1000_GenomesTSHB 
ICGC programENSG00000134200 
Somatic Mutations in Cancer : COSMICTSHB 
CONAN: Copy Number AnalysisTSHB 
Mutations and Diseases : HGMDTSHB
Mutations and Diseases : intOGenTSHB
Genomic VariantsTSHB  TSHB [DGVbeta]
dbVarTSHB
ClinVarTSHB
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM188540    275100   
MedgenTSHB
GENETestsTSHB
Disease Genetic AssociationTSHB
Huge Navigator TSHB [HugePedia]  TSHB [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTSHB
Homology/Alignments : Family Browser (UCSC)TSHB
Phylogenetic Trees/Animal Genes : TreeFamTSHB
Chemical/Protein Interactions : CTD7252
Chemical/Pharm GKB GenePA37041
Clinical trialTSHB
Cancer Resource (Charite)ENSG00000134200
Other databases
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
CoreMineTSHB
iHOPTSHB
OncoSearchTSHB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:23:47 CEST 2014

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