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TSHB (thyroid stimulating hormone beta)

Identity

Other namesTSH-B
TSH-BETA
HGNC (Hugo) TSHB
LocusID (NCBI) 7252
Atlas_Id 52753
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 115572445 and ends at 115576930 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSHB   12372
Cards
Entrez_Gene (NCBI)TSHB  7252  thyroid stimulating hormone beta
AliasesTSH-B; TSH-BETA
GeneCards (Weizmann)TSHB
Ensembl hg19 (Hinxton)ENSG00000134200 [Gene_View]  chr1:115572445-115576930 [Contig_View]  TSHB [Vega]
Ensembl hg38 (Hinxton)ENSG00000134200 [Gene_View]  chr1:115572445-115576930 [Contig_View]  TSHB [Vega]
ICGC DataPortalENSG00000134200
TCGA cBioPortalTSHB
AceView (NCBI)TSHB
Genatlas (Paris)TSHB
WikiGenes7252
SOURCE (Princeton)TSHB
Genomic and cartography
GoldenPath hg19 (UCSC)TSHB  -     chr1:115572445-115576930 +  1p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSHB  -     1p13.2   [Description]    (hg38-Dec_2013)
EnsemblTSHB - 1p13.2 [CytoView hg19]  TSHB - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBITSHB [Mapview hg19]  TSHB [Mapview hg38]
OMIM188540   275100   
Gene and transcription
Genbank (Entrez)BC069298 HQ448420 S51112
RefSeq transcript (Entrez)NM_000549 NM_001277991
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_015891 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TSHB
Cluster EST : UnigeneHs.406687 [ NCBI ]
CGAP (NCI)Hs.406687
Alternative Splicing GalleryENSG00000134200
Gene ExpressionTSHB [ NCBI-GEO ]   TSHB [ EBI - ARRAY_EXPRESS ]   TSHB [ SEEK ]   TSHB [ MEM ]
Gene Expression Viewer (FireBrowse)TSHB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7252
GTEX Portal (Tissue expression)TSHB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01222 (Uniprot)
NextProtP01222  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01222
Splice isoforms : SwissVarP01222 (Swissvar)
PhosPhoSitePlusP01222
Domaine pattern : Prosite (Expaxy)GLYCO_HORMONE_BETA_1 (PS00261)    GLYCO_HORMONE_BETA_2 (PS00689)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Glyco_hormone_CN    Gonadotropin_bsu    Gonadotropin_bsu_CS   
Domain families : Pfam (Sanger)Cys_knot (PF00007)   
Domain families : Pfam (NCBI)pfam00007   
Domain families : Smart (EMBL)GHB (SM00068)  
DMDM Disease mutations7252
Blocks (Seattle)TSHB
SuperfamilyP01222
Human Protein AtlasENSG00000134200
Peptide AtlasP01222
HPRD11766
IPIIPI00000851   IPI00745707   
Protein Interaction databases
DIP (DOE-UCLA)P01222
IntAct (EBI)P01222
FunCoupENSG00000134200
BioGRIDTSHB
STRING (EMBL)TSHB
ZODIACTSHB
Ontologies - Pathways
QuickGOP01222
Ontology : AmiGOhormone activity  extracellular region  G-protein coupled receptor signaling pathway  cell-cell signaling  anatomical structure morphogenesis  peptide hormone processing  response to vitamin A  response to estrogen  response to calcium ion  
Ontology : EGO-EBIhormone activity  extracellular region  G-protein coupled receptor signaling pathway  cell-cell signaling  anatomical structure morphogenesis  peptide hormone processing  response to vitamin A  response to estrogen  response to calcium ion  
Pathways : KEGGNeuroactive ligand-receptor interaction    Thyroid hormone synthesis    Autoimmune thyroid disease   
NDEx NetworkTSHB
Atlas of Cancer Signalling NetworkTSHB
Wikipedia pathwaysTSHB
Orthology - Evolution
OrthoDB7252
GeneTree (enSembl)ENSG00000134200
Phylogenetic Trees/Animal Genes : TreeFamTSHB
Homologs : HomoloGeneTSHB
Homology/Alignments : Family Browser (UCSC)TSHB
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTSHB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSHB
dbVarTSHB
ClinVarTSHB
1000_GenomesTSHB 
Exome Variant ServerTSHB
ExAC (Exome Aggregation Consortium)TSHB (select the gene name)
Genetic variants : HAPMAP7252
Genomic Variants (DGV)TSHB [DGVbeta]
Mutations
ICGC Data PortalTSHB 
TCGA Data PortalTSHB 
Broad Tumor PortalTSHB
OASIS PortalTSHB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSHB 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSHB
DgiDB (Drug Gene Interaction Database)TSHB
DoCM (Curated mutations)TSHB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSHB (select a term)
intoGenTSHB
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:115572445-115576930  ENSG00000134200
CONAN: Copy Number AnalysisTSHB 
Mutations and Diseases : HGMDTSHB
OMIM188540    275100   
MedgenTSHB
Genetic Testing Registry TSHB
NextProtP01222 [Medical]
TSGene7252
GENETestsTSHB
Huge Navigator TSHB [HugePedia]
snp3D : Map Gene to Disease7252
BioCentury BCIQTSHB
ClinGenTSHB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7252
Chemical/Pharm GKB GenePA37041
Clinical trialTSHB
Miscellaneous
canSAR (ICR)TSHB (select the gene name)
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSHB
EVEXTSHB
GoPubMedTSHB
iHOPTSHB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:18:06 CEST 2016

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