Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TSHZ1 (teashirt zinc finger homeobox 1)

Identity

Other namesCAA
NY-CO-33
SDCCAG33
TSH1
HGNC (Hugo) TSHZ1
LocusID (NCBI) 10194
Location 18q22.3
Location_base_pair Starts at 72922710 and ends at 73001905 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSHZ1   10669
Entrez_Gene (NCBI)TSHZ1  10194  teashirt zinc finger homeobox 1
Cards
GeneCards (Weizmann)TSHZ1
Ensembl (Hinxton)ENSG00000179981 [Gene_View]  chr18:72922710-73001905 [Contig_View]  TSHZ1 [Vega]
AceView (NCBI)TSHZ1
Genatlas (Paris)TSHZ1
SOURCE (Stanford)NM_005786
Genomic and cartography
GoldenPath (UCSC)TSHZ1  -  18q22.3   chr18:72922710-73001905 +  18q22.3   [Description]    (hg19-Feb_2009)
EnsemblTSHZ1 - 18q22.3 [CytoView]
Mapping of homologs : NCBITSHZ1 [Mapview]
OMIM607842   614427   
Gene and transcription
Genbank (Entrez)AB210042 AF039698 AI041446 AK127042 AK223545
RefSeq transcript (SRS)NM_005786
RefSeq transcript (Entrez)NM_005786
RefSeq genomic (SRS)AC_000150 NC_000018 NC_018929 NG_032047 NT_025028 NW_001838470 NW_004078095
RefSeq genomic (Entrez)AC_000150 NC_000018 NC_018929 NG_032047 NT_025028 NW_001838470 NW_004078095
Consensus coding sequences : CCDS (NCBI)TSHZ1
Cluster EST : UnigeneHs.284217 [ SRS ] Hs.284217 [ NCBI ]
CGAP (NCI)Hs.284217
Alternative Splicing : Fast-db (Paris)GSHG0014124
Alternative Splicing GalleryENSG00000179981
Gene ExpressionTSHZ1 [ NCBI-GEO ]   TSHZ1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSZ6 (SRS) Q6ZSZ6 (Uniprot)
NextProtQ6ZSZ6
With graphics : InterProQ6ZSZ6
Splice isoforms : SwissVarQ6ZSZ6(Swissvar)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Homeodomain    Homeodomain-like    Tshz1    Znf_C2H2    Znf_C2H2-like   
Domains : Interpro (EBI)Homeodomain    Homeodomain-like    Tshz1    Znf_C2H2    Znf_C2H2-like   
Related proteins : CluSTrQ6ZSZ6
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)HOX (SM00389)  ZnF_C2H2 (SM00355)  
DMDM10194
Blocks (Seattle)Q6ZSZ6
Human Protein AtlasENSG00000179981
HPRD15308
IPIIPI00418941   IPI01008913   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSZ6
IntAct (EBI)Q6ZSZ6
FunCoupENSG00000179981
REACTOMETSHZ1
Protein Interaction Database10194
BioGRIDTSHZ1
InParanoidQ6ZSZ6
Interologous Interaction database Q6ZSZ6
IntegromeDBTSHZ1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSHZ1
SNP (GeneSNP Utah)TSHZ1
SNP : HGBaseTSHZ1
Genetic variants : HAPMAPTSHZ1
Somatic Mutations in Cancer : COSMICTSHZ1 
CONAN: Copy Number AnalysisTSHZ1 
Mutations and Diseases : HGMDTSHZ1
OMIM607842    614427   
GENETests607842    614427   
Disease Genetic AssociationTSHZ1
Huge Navigator TSHZ1 [HugePedia]  TSHZ1 [HugeCancerGEM]
Genomic VariantsTSHZ1  TSHZ1 [DGVbeta]
snp3D : Map Gene to Disease10194
General knowledge
Homologs : HomoloGeneTSHZ1
Homology/Alignments : Family Browser (UCSC)TSHZ1
Phylogenetic Trees/Animal Genes : TreeFamTSHZ1
Chemical/Protein Interactions : CTD10194
Chemical/Pharm GKB GenePA35599
Clinical trialTSHZ1
Cancer Resource (Charite)ENSG00000179981
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  nucleus  nucleolus  transcription, DNA-dependent  zinc ion binding  anterior/posterior pattern specification  middle ear morphogenesis  sequence-specific DNA binding  metal ion binding  soft palate development  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  nucleus  nucleolus  transcription, DNA-dependent  zinc ion binding  anterior/posterior pattern specification  middle ear morphogenesis  sequence-specific DNA binding  metal ion binding  soft palate development  
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
PubGeneTSHZ1
iHOPTSHZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:43:07 CEST 2013
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