Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TSHZ1 (teashirt zinc finger homeobox 1)

Identity

Alias_namesSDCCAG33
serologically defined colon cancer antigen 33
teashirt zinc finger 1
teashirt family zinc finger 1
Alias_symbol (synonym)NY-CO-33
TSH1
Other aliasCAA
HGNC (Hugo) TSHZ1
LocusID (NCBI) 10194
Atlas_Id 42231
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 75211529 and ends at 75289950 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BGN (Xq28) / TSHZ1 (18q22.3)TSHZ1 (18q22.3) / BGN (Xq28)TSHZ1 (18q22.3) / TSHZ1 (18q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSHZ1   10669
Cards
Entrez_Gene (NCBI)TSHZ1  10194  teashirt zinc finger homeobox 1
AliasesCAA; NY-CO-33; SDCCAG33; TSH1
GeneCards (Weizmann)TSHZ1
Ensembl hg19 (Hinxton)ENSG00000179981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179981 [Gene_View]  chr18:75211529-75289950 [Contig_View]  TSHZ1 [Vega]
ICGC DataPortalENSG00000179981
TCGA cBioPortalTSHZ1
AceView (NCBI)TSHZ1
Genatlas (Paris)TSHZ1
WikiGenes10194
SOURCE (Princeton)TSHZ1
Genetics Home Reference (NIH)TSHZ1
Genomic and cartography
GoldenPath hg38 (UCSC)TSHZ1  -     chr18:75211529-75289950 +  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSHZ1  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblTSHZ1 - 18q22.3 [CytoView hg19]  TSHZ1 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBITSHZ1 [Mapview hg19]  TSHZ1 [Mapview hg38]
OMIM607842   614427   
Gene and transcription
Genbank (Entrez)AB210042 AF039698 AI041446 AI167135 AK127042
RefSeq transcript (Entrez)NM_001308210 NM_005786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSHZ1
Cluster EST : UnigeneHs.284217 [ NCBI ]
CGAP (NCI)Hs.284217
Alternative Splicing GalleryENSG00000179981
Gene ExpressionTSHZ1 [ NCBI-GEO ]   TSHZ1 [ EBI - ARRAY_EXPRESS ]   TSHZ1 [ SEEK ]   TSHZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSHZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10194
GTEX Portal (Tissue expression)TSHZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSZ6
Splice isoforms : SwissVarQ6ZSZ6
PhosPhoSitePlusQ6ZSZ6
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Homeobox_dom    Teashirt_fam    Tshz1    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)HOX (SM00389)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)TSHZ1
DMDM Disease mutations10194
Blocks (Seattle)TSHZ1
SuperfamilyQ6ZSZ6
Human Protein AtlasENSG00000179981
Peptide AtlasQ6ZSZ6
HPRD15308
IPIIPI00418941   IPI01008913   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSZ6
IntAct (EBI)Q6ZSZ6
FunCoupENSG00000179981
BioGRIDTSHZ1
STRING (EMBL)TSHZ1
ZODIACTSHZ1
Ontologies - Pathways
QuickGOQ6ZSZ6
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  chromatin binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  multicellular organism development  anterior/posterior pattern specification  middle ear morphogenesis  metal ion binding  soft palate development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  chromatin binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  multicellular organism development  anterior/posterior pattern specification  middle ear morphogenesis  metal ion binding  soft palate development  
NDEx NetworkTSHZ1
Atlas of Cancer Signalling NetworkTSHZ1
Wikipedia pathwaysTSHZ1
Orthology - Evolution
OrthoDB10194
GeneTree (enSembl)ENSG00000179981
Phylogenetic Trees/Animal Genes : TreeFamTSHZ1
HOVERGENQ6ZSZ6
HOGENOMQ6ZSZ6
Homologs : HomoloGeneTSHZ1
Homology/Alignments : Family Browser (UCSC)TSHZ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSHZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSHZ1
dbVarTSHZ1
ClinVarTSHZ1
1000_GenomesTSHZ1 
Exome Variant ServerTSHZ1
ExAC (Exome Aggregation Consortium)TSHZ1 (select the gene name)
Genetic variants : HAPMAP10194
Genomic Variants (DGV)TSHZ1 [DGVbeta]
DECIPHERTSHZ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSHZ1 
Mutations
ICGC Data PortalTSHZ1 
TCGA Data PortalTSHZ1 
Broad Tumor PortalTSHZ1
OASIS PortalTSHZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSHZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSHZ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSHZ1
DgiDB (Drug Gene Interaction Database)TSHZ1
DoCM (Curated mutations)TSHZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSHZ1 (select a term)
intoGenTSHZ1
Cancer3DTSHZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607842    614427   
Orphanet17030   
MedgenTSHZ1
Genetic Testing Registry TSHZ1
NextProtQ6ZSZ6 [Medical]
TSGene10194
GENETestsTSHZ1
Target ValidationTSHZ1
Huge Navigator TSHZ1 [HugePedia]
snp3D : Map Gene to Disease10194
BioCentury BCIQTSHZ1
ClinGenTSHZ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10194
Chemical/Pharm GKB GenePA35599
Clinical trialTSHZ1
Miscellaneous
canSAR (ICR)TSHZ1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSHZ1
EVEXTSHZ1
GoPubMedTSHZ1
iHOPTSHZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:17:50 CEST 2017

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