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TSHZ2 (teashirt zinc finger homeobox 2)

Identity

Alias (NCBI)C20orf17
OVC10-2
TSH2
ZABC2
ZNF218
HGNC (Hugo) TSHZ2
HGNC Alias symbZABC2
OVC10-2
TSH2
HGNC Previous nameC20orf17
 ZNF218
HGNC Previous namechromosome 20 open reading frame 17
 zinc finger protein 218
 teashirt family zinc finger 2
LocusID (NCBI) 128553
Atlas_Id 52293
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 52972358 and ends at 53495330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARFGEF2 (20q13.13) / TSHZ2 (20q13.2)ITCH (20q11.22) / TSHZ2 (20q13.2)OSBPL8 (12q21.2) / TSHZ2 (20q13.2)
PEX26 (22q11.21) / TSHZ2 (20q13.2)SDC4 (20q13.12) / TSHZ2 (20q13.2)STK4 (20q13.12) / TSHZ2 (20q13.2)
TAF4 (20q13.33) / TSHZ2 (20q13.2)TSHZ2 (20q13.2) / TSHZ2 (20q13.2)TSHZ2 (20q13.2) / ZRANB3 (2q21.3)
UAP1 (1q23.3) / TSHZ2 (20q13.2)USP35 (11q14.1) / TSHZ2 (20q13.2)ARFGEF2 20q13.13 / TSHZ2 20q13.2
ITCH 20q11.22 / TSHZ2 20q13.2OSBPL8 12q21.2 / TSHZ2 20q13.2SDC4 20q13.12 / TSHZ2 20q13.2
STK4 20q13.12 / TSHZ2 20q13.2TAF4 20q13.33 / TSHZ2 20q13.2UAP1 1q23.3 / TSHZ2 20q13.2
USP35 11q14.1 / TSHZ2 20q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSHZ2   13010
Cards
Entrez_Gene (NCBI)TSHZ2    teashirt zinc finger homeobox 2
AliasesC20orf17; OVC10-2; TSH2; ZABC2; 
ZNF218
GeneCards (Weizmann)TSHZ2
Ensembl hg19 (Hinxton)ENSG00000182463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182463 [Gene_View]  ENSG00000182463 [Sequence]  chr20:52972358-53495330 [Contig_View]  TSHZ2 [Vega]
ICGC DataPortalENSG00000182463
TCGA cBioPortalTSHZ2
AceView (NCBI)TSHZ2
Genatlas (Paris)TSHZ2
SOURCE (Princeton)TSHZ2
Genetics Home Reference (NIH)TSHZ2
Genomic and cartography
GoldenPath hg38 (UCSC)TSHZ2  -     chr20:52972358-53495330 +  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSHZ2  -     20q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTSHZ2 - 20q13.2 [CytoView hg19]  TSHZ2 - 20q13.2 [CytoView hg38]
ImmunoBaseENSG00000182463
Genome Data Viewer NCBITSHZ2 [Mapview hg19]  
OMIM614118   
Gene and transcription
Genbank (Entrez)AF230201 AK091206 AK302570 AY926481 BQ574274
RefSeq transcript (Entrez)NM_001193421 NM_173485
Consensus coding sequences : CCDS (NCBI)TSHZ2
Gene ExpressionTSHZ2 [ NCBI-GEO ]   TSHZ2 [ EBI - ARRAY_EXPRESS ]   TSHZ2 [ SEEK ]   TSHZ2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSHZ2 [ Firebrowse - Broad ]
GenevisibleExpression of TSHZ2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128553
GTEX Portal (Tissue expression)TSHZ2
Human Protein AtlasENSG00000182463-TSHZ2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRE2
PhosPhoSitePlusQ9NRE2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Homeobox_dom    Teashirt_fam    Tshz2    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)HOX (SM00389)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)TSHZ2
SuperfamilyQ9NRE2
AlphaFold pdb e-kbQ9NRE2   
Human Protein Atlas [tissue]ENSG00000182463-TSHZ2 [tissue]
HPRD10730
Protein Interaction databases
DIP (DOE-UCLA)Q9NRE2
IntAct (EBI)Q9NRE2
BioGRIDTSHZ2
STRING (EMBL)TSHZ2
ZODIACTSHZ2
Ontologies - Pathways
QuickGOQ9NRE2
Ontology : AmiGOchromatin  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  multicellular organism development  metal ion binding  
Ontology : EGO-EBIchromatin  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  multicellular organism development  metal ion binding  
NDEx NetworkTSHZ2
Atlas of Cancer Signalling NetworkTSHZ2
Wikipedia pathwaysTSHZ2
Orthology - Evolution
OrthoDB128553
GeneTree (enSembl)ENSG00000182463
Phylogenetic Trees/Animal Genes : TreeFamTSHZ2
Homologs : HomoloGeneTSHZ2
Homology/Alignments : Family Browser (UCSC)TSHZ2
Gene fusions - Rearrangements
Fusion : MitelmanARFGEF2/TSHZ2 [20q13.13/20q13.2]  
Fusion : MitelmanITCH/TSHZ2 [20q11.22/20q13.2]  
Fusion : MitelmanOSBPL8/TSHZ2 [12q21.2/20q13.2]  
Fusion : MitelmanSDC4/TSHZ2 [20q13.12/20q13.2]  
Fusion : MitelmanSTK4/TSHZ2 [20q13.12/20q13.2]  
Fusion : MitelmanTAF4/TSHZ2 [20q13.33/20q13.2]  
Fusion : MitelmanUAP1/TSHZ2 [1q23.3/20q13.2]  
Fusion : MitelmanUSP35/TSHZ2 [11q14.1/20q13.2]  
Fusion : QuiverTSHZ2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSHZ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSHZ2
dbVarTSHZ2
ClinVarTSHZ2
MonarchTSHZ2
1000_GenomesTSHZ2 
Exome Variant ServerTSHZ2
GNOMAD BrowserENSG00000182463
Varsome BrowserTSHZ2
ACMGTSHZ2 variants
VarityQ9NRE2
Genomic Variants (DGV)TSHZ2 [DGVbeta]
DECIPHERTSHZ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSHZ2 
Mutations
ICGC Data PortalTSHZ2 
TCGA Data PortalTSHZ2 
Broad Tumor PortalTSHZ2
OASIS PortalTSHZ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSHZ2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSHZ2
Mutations and Diseases : HGMDTSHZ2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSHZ2
DgiDB (Drug Gene Interaction Database)TSHZ2
DoCM (Curated mutations)TSHZ2
CIViC (Clinical Interpretations of Variants in Cancer)TSHZ2
Cancer3DTSHZ2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614118   
Orphanet
DisGeNETTSHZ2
MedgenTSHZ2
Genetic Testing Registry TSHZ2
NextProtQ9NRE2 [Medical]
GENETestsTSHZ2
Target ValidationTSHZ2
Huge Navigator TSHZ2 [HugePedia]
ClinGenTSHZ2
Clinical trials, drugs, therapy
MyCancerGenomeTSHZ2
Protein Interactions : CTDTSHZ2
Pharm GKB GenePA37589
PharosQ9NRE2
Clinical trialTSHZ2
Miscellaneous
canSAR (ICR)TSHZ2
HarmonizomeTSHZ2
DataMed IndexTSHZ2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSHZ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:36 CEST 2021

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