Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TSHZ3 (teashirt zinc finger homeobox 3)

Identity

Other namesTSH3
ZNF537
HGNC (Hugo) TSHZ3
LocusID (NCBI) 57616
Location 19q12
Location_base_pair Starts at 31765851 and ends at 31840190 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TSHZ3   30700
Entrez_Gene (NCBI)TSHZ3  57616  teashirt zinc finger homeobox 3
Cards
GeneCards (Weizmann)TSHZ3
Ensembl (Hinxton)ENSG00000121297 [Gene_View]  chr19:31765851-31840190 [Contig_View]  TSHZ3 [Vega]
AceView (NCBI)TSHZ3
Genatlas (Paris)TSHZ3
SOURCE (Stanford)NM_020856
Genomic and cartography
GoldenPath (UCSC)TSHZ3  -  19q12   chr19:31765851-31840190 -  19q12   [Description]    (hg19-Feb_2009)
EnsemblTSHZ3 - 19q12 [CytoView]
Mapping of homologs : NCBITSHZ3 [Mapview]
OMIM614119   
Gene and transcription
Genbank (Entrez)AB040907 AI015687 AK291466 AK293267 AL136805
RefSeq transcript (SRS)NM_020856
RefSeq transcript (Entrez)NM_020856
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838491 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838491 NW_004078099
Consensus coding sequences : CCDS (NCBI)TSHZ3
Cluster EST : UnigeneHs.278436 [ SRS ] Hs.278436 [ NCBI ]
CGAP (NCI)Hs.278436
Alternative Splicing : Fast-db (Paris)GSHG0015709
Alternative Splicing GalleryENSG00000121297
Gene ExpressionTSHZ3 [ NCBI-GEO ]   TSHZ3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63HK5 (SRS) Q63HK5 (Uniprot)
NextProtQ63HK5
With graphics : InterProQ63HK5
Splice isoforms : SwissVarQ63HK5(Swissvar)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Homeodomain    Homeodomain-like    Tshz3    Znf_C2H2    Znf_C2H2-like   
Domains : Interpro (EBI)Homeodomain    Homeodomain-like    Tshz3    Znf_C2H2    Znf_C2H2-like   
Related proteins : CluSTrQ63HK5
Domain families : Pfam (SRS)zf-C2H2 (PF00096)   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)HOX (SM00389)  ZnF_C2H2 (SM00355)  
DMDM57616
Blocks (Seattle)Q63HK5
PDB (SRS)2DMI   
PDB (PDBSum)2DMI   
PDB (IMB)2DMI   
PDB (RSDB)2DMI   
Human Protein AtlasENSG00000121297
HPRD18351
IPIIPI00001743   
Protein Interaction databases
DIP (DOE-UCLA)Q63HK5
IntAct (EBI)Q63HK5
FunCoupENSG00000121297
REACTOMETSHZ3
Protein Interaction Database57616
BioGRIDTSHZ3
InParanoidQ63HK5
Interologous Interaction database Q63HK5
IntegromeDBTSHZ3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSHZ3
SNP (GeneSNP Utah)TSHZ3
SNP : HGBaseTSHZ3
Genetic variants : HAPMAPTSHZ3
Somatic Mutations in Cancer : COSMICTSHZ3 
CONAN: Copy Number AnalysisTSHZ3 
Mutations and Diseases : HGMDTSHZ3
OMIM614119   
GENETests614119   
Disease Genetic AssociationTSHZ3
Huge Navigator TSHZ3 [HugePedia]  TSHZ3 [HugeCancerGEM]
Genomic VariantsTSHZ3  TSHZ3 [DGVbeta]
snp3D : Map Gene to Disease57616
General knowledge
Homologs : HomoloGeneTSHZ3
Homology/Alignments : Family Browser (UCSC)TSHZ3
Phylogenetic Trees/Animal Genes : TreeFamTSHZ3
Chemical/Protein Interactions : CTD57616
Chemical/Pharm GKB GenePA134887020
Clinical trialTSHZ3
Cancer Resource (Charite)ENSG00000121297
Ontology : AmiGOmetanephros development  ureteric bud development  in utero embryonic development  regulation of respiratory gaseous exchange by neurological system process  chromatin binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  mitochondrion  transcription, DNA-dependent  zinc ion binding  lung development  growth cone  sequence-specific DNA binding  negative regulation of transcription, DNA-dependent  metal ion binding  musculoskeletal movement  sensory perception of touch  positive regulation of smooth muscle cell differentiation  kidney morphogenesis  ureteric peristalsis  ureter smooth muscle cell differentiation  kidney smooth muscle cell differentiation  
Ontology : EGO-EBImetanephros development  ureteric bud development  in utero embryonic development  regulation of respiratory gaseous exchange by neurological system process  chromatin binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  mitochondrion  transcription, DNA-dependent  zinc ion binding  lung development  growth cone  sequence-specific DNA binding  negative regulation of transcription, DNA-dependent  metal ion binding  musculoskeletal movement  sensory perception of touch  positive regulation of smooth muscle cell differentiation  kidney morphogenesis  ureteric peristalsis  ureter smooth muscle cell differentiation  kidney smooth muscle cell differentiation  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneTSHZ3
iHOPTSHZ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:43:17 CEST 2013
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