Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TSIX (TSIX transcript, XIST antisense RNA)

Identity

Alias (NCBI)LINC00013
NCRNA00013
XIST-AS
XIST-AS1
XISTAS
HGNC (Hugo) TSIX
HGNC Alias symbNCRNA00013
XIST-AS1
LINC00013
HGNC Alias nameXIST antisense RNA (non-protein coding)
 long intergenic non-protein coding RNA 13
HGNC Previous nameX (inactive)-specific transcript, antisense
 TSIX transcript, XIST antisense RNA (non-protein coding)
LocusID (NCBI) 9383
Atlas_Id 75227
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73792205 and ends at 73829231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELF1 (13q14.11) / TSIX (Xq13.2)GPNMB (7p15.3) / TSIX (Xq13.2)MEIS3 (19q13.32) / TSIX (Xq13.2)
TSIX (Xq13.2) / DECR2 (16p13.3)TSIX (Xq13.2) / TOMM40L (1q23.3)TSIX (Xq13.2) / TSIX (Xq13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TSIX   12377
Cards
Entrez_Gene (NCBI)TSIX    TSIX transcript, XIST antisense RNA
AliasesLINC00013; NCRNA00013; XIST-AS; XIST-AS1; 
XISTAS
GeneCards (Weizmann)TSIX
Ensembl hg19 (Hinxton)ENSG00000270641 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270641 [Gene_View]  ENSG00000270641 [Sequence]  chrX:73792205-73829231 [Contig_View]  TSIX [Vega]
ICGC DataPortalENSG00000270641
TCGA cBioPortalTSIX
AceView (NCBI)TSIX
Genatlas (Paris)TSIX
SOURCE (Princeton)TSIX
Genetics Home Reference (NIH)TSIX
Genomic and cartography
GoldenPath hg38 (UCSC)TSIX  -     chrX:73792205-73829231 +  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSIX  -     Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPathTSIX - Xq13.2 [CytoView hg19]  TSIX - Xq13.2 [CytoView hg38]
ImmunoBaseENSG00000270641
Genome Data Viewer NCBITSIX [Mapview hg19]  
OMIM300181   
Gene and transcription
Genbank (Entrez)AA357843 AV731454
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TSIX
Gene ExpressionTSIX [ NCBI-GEO ]   TSIX [ EBI - ARRAY_EXPRESS ]   TSIX [ SEEK ]   TSIX [ MEM ]
Gene Expression Viewer (FireBrowse)TSIX [ Firebrowse - Broad ]
GenevisibleExpression of TSIX in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9383
GTEX Portal (Tissue expression)TSIX
Human Protein AtlasENSG00000270641-TSIX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSIX
Human Protein Atlas [tissue]ENSG00000270641-TSIX [tissue]
Protein Interaction databases
BioGRIDTSIX
STRING (EMBL)TSIX
ZODIACTSIX
Ontologies - Pathways
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSIX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:07 CEST 2021

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