Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TSIX (TSIX transcript, XIST antisense RNA)

Identity

Alias_namesX (inactive)-specific transcript, antisense
TSIX transcript, XIST antisense RNA (non-protein coding)
Alias_symbol (synonym)NCRNA00013
XIST-AS1
LINC00013
Other aliasXIST-AS
XISTAS
HGNC (Hugo) TSIX
LocusID (NCBI) 9383
Atlas_Id 75227
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73012040 and ends at 73049066 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ELF1 (13q14.11) / TSIX (Xq13.2)GPNMB (7p15.3) / TSIX (Xq13.2)MEIS3 (19q13.32) / TSIX (Xq13.2)
TSIX (Xq13.2) / DECR2 (16p13.3)TSIX (Xq13.2) / TOMM40L (1q23.3)TSIX (Xq13.2) / TSIX (Xq13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSIX   12377
Cards
Entrez_Gene (NCBI)TSIX  9383  TSIX transcript, XIST antisense RNA
AliasesLINC00013; NCRNA00013; XIST-AS; XIST-AS1; 
XISTAS
GeneCards (Weizmann)TSIX
Ensembl hg19 (Hinxton)ENSG00000270641 [Gene_View]  chrX:73012040-73049066 [Contig_View]  TSIX [Vega]
Ensembl hg38 (Hinxton)ENSG00000270641 [Gene_View]  chrX:73012040-73049066 [Contig_View]  TSIX [Vega]
ICGC DataPortalENSG00000270641
TCGA cBioPortalTSIX
AceView (NCBI)TSIX
Genatlas (Paris)TSIX
WikiGenes9383
SOURCE (Princeton)TSIX
Genetics Home Reference (NIH)TSIX
Genomic and cartography
GoldenPath hg19 (UCSC)TSIX  -     chrX:73012040-73049066 +  Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSIX  -     Xq13.2   [Description]    (hg38-Dec_2013)
EnsemblTSIX - Xq13.2 [CytoView hg19]  TSIX - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBITSIX [Mapview hg19]  TSIX [Mapview hg38]
OMIM300181   
Gene and transcription
Genbank (Entrez)AA357843 AV731454 HG512578
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)TSIX
Cluster EST : UnigeneHs.529901 [ NCBI ]
CGAP (NCI)Hs.529901
Alternative Splicing GalleryENSG00000270641
Gene ExpressionTSIX [ NCBI-GEO ]   TSIX [ EBI - ARRAY_EXPRESS ]   TSIX [ SEEK ]   TSIX [ MEM ]
Gene Expression Viewer (FireBrowse)TSIX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9383
GTEX Portal (Tissue expression)TSIX
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSIX
DMDM Disease mutations9383
Blocks (Seattle)TSIX
Human Protein AtlasENSG00000270641
Protein Interaction databases
FunCoupENSG00000270641
BioGRIDTSIX
STRING (EMBL)TSIX
ZODIACTSIX
Ontologies - Pathways
Huge Navigator TSIX [HugePedia]
snp3D : Map Gene to Disease9383
BioCentury BCIQTSIX
ClinGenTSIX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9383
Chemical/Pharm GKB GenePA37046
Clinical trialTSIX
Miscellaneous
canSAR (ICR)TSIX (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSIX
EVEXTSIX
GoPubMedTSIX
iHOPTSIX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:56 CET 2017

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