Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSKS (testis specific serine kinase substrate)

Identity

Alias_namesregulatory subunit 161
Alias_symbol (synonym)TSSKS
PPP1R161
Other aliasSTK22S1
TSKS1
HGNC (Hugo) TSKS
LocusID (NCBI) 60385
Atlas_Id 42714
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49739754 and ends at 49763258 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSKS   30719
Cards
Entrez_Gene (NCBI)TSKS  60385  testis specific serine kinase substrate
AliasesPPP1R161; STK22S1; TSKS1; TSSKS
GeneCards (Weizmann)TSKS
Ensembl hg19 (Hinxton)ENSG00000126467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126467 [Gene_View]  chr19:49739754-49763258 [Contig_View]  TSKS [Vega]
ICGC DataPortalENSG00000126467
TCGA cBioPortalTSKS
AceView (NCBI)TSKS
Genatlas (Paris)TSKS
WikiGenes60385
SOURCE (Princeton)TSKS
Genetics Home Reference (NIH)TSKS
Genomic and cartography
GoldenPath hg38 (UCSC)TSKS  -     chr19:49739754-49763258 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSKS  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblTSKS - 19q13.33 [CytoView hg19]  TSKS - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBITSKS [Mapview hg19]  TSKS [Mapview hg38]
OMIM608253   
Gene and transcription
Genbank (Entrez)AF411384 BC058862
RefSeq transcript (Entrez)NM_021733
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSKS
Cluster EST : UnigeneHs.515858 [ NCBI ]
CGAP (NCI)Hs.515858
Alternative Splicing GalleryENSG00000126467
Gene ExpressionTSKS [ NCBI-GEO ]   TSKS [ EBI - ARRAY_EXPRESS ]   TSKS [ SEEK ]   TSKS [ MEM ]
Gene Expression Viewer (FireBrowse)TSKS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60385
GTEX Portal (Tissue expression)TSKS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJT2
Splice isoforms : SwissVarQ9UJT2
PhosPhoSitePlusQ9UJT2
Domains : Interpro (EBI)TSKS   
Domain families : Pfam (Sanger)TSKS (PF15358)   
Domain families : Pfam (NCBI)pfam15358   
Conserved Domain (NCBI)TSKS
DMDM Disease mutations60385
Blocks (Seattle)TSKS
SuperfamilyQ9UJT2
Human Protein AtlasENSG00000126467
Peptide AtlasQ9UJT2
HPRD09748
IPIIPI00028056   IPI00401162   IPI00479063   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJT2
IntAct (EBI)Q9UJT2
FunCoupENSG00000126467
BioGRIDTSKS
STRING (EMBL)TSKS
ZODIACTSKS
Ontologies - Pathways
QuickGOQ9UJT2
Ontology : AmiGOacrosomal vesicle  protein binding  centriole  negative regulation of phosphatase activity  protein kinase binding  
Ontology : EGO-EBIacrosomal vesicle  protein binding  centriole  negative regulation of phosphatase activity  protein kinase binding  
NDEx NetworkTSKS
Atlas of Cancer Signalling NetworkTSKS
Wikipedia pathwaysTSKS
Orthology - Evolution
OrthoDB60385
GeneTree (enSembl)ENSG00000126467
Phylogenetic Trees/Animal Genes : TreeFamTSKS
HOVERGENQ9UJT2
HOGENOMQ9UJT2
Homologs : HomoloGeneTSKS
Homology/Alignments : Family Browser (UCSC)TSKS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSKS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSKS
dbVarTSKS
ClinVarTSKS
1000_GenomesTSKS 
Exome Variant ServerTSKS
ExAC (Exome Aggregation Consortium)TSKS (select the gene name)
Genetic variants : HAPMAP60385
Genomic Variants (DGV)TSKS [DGVbeta]
DECIPHERTSKS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSKS 
Mutations
ICGC Data PortalTSKS 
TCGA Data PortalTSKS 
Broad Tumor PortalTSKS
OASIS PortalTSKS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSKS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSKS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSKS
DgiDB (Drug Gene Interaction Database)TSKS
DoCM (Curated mutations)TSKS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSKS (select a term)
intoGenTSKS
Cancer3DTSKS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608253   
Orphanet
MedgenTSKS
Genetic Testing Registry TSKS
NextProtQ9UJT2 [Medical]
TSGene60385
GENETestsTSKS
Huge Navigator TSKS [HugePedia]
snp3D : Map Gene to Disease60385
BioCentury BCIQTSKS
ClinGenTSKS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60385
Chemical/Pharm GKB GenePA164727339
Clinical trialTSKS
Miscellaneous
canSAR (ICR)TSKS (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSKS
EVEXTSKS
GoPubMedTSKS
iHOPTSKS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:42:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.