Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TSN (translin)

Identity

Other namesBCLF-1
C3PO
RCHF1
REHF-1
TBRBP
TRSLN
HGNC (Hugo) TSN
LocusID (NCBI) 7247
Location 2q14.3
Location_base_pair Starts at 122513121 and ends at 122525428 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSN   12379
Entrez_Gene (NCBI)TSN  7247  translin
Cards
GeneCards (Weizmann)TSN
Ensembl (Hinxton)ENSG00000211460 [Gene_View]  chr2:122513121-122525428 [Contig_View]  TSN [Vega]
AceView (NCBI)TSN
Genatlas (Paris)TSN
SOURCE (Stanford)NM_001261401 NM_004622
Genomic and cartography
GoldenPath (UCSC)TSN  -  2q14.3   chr2:122513121-122525428 +  2q14.3   [Description]    (hg19-Feb_2009)
EnsemblTSN - 2q14.3 [CytoView]
Mapping of homologs : NCBITSN [Mapview]
OMIM600575   
Gene and transcription
Genbank (Entrez)AK091915 AK222868 AK296469 AK298812 AK307344
RefSeq transcript (SRS)NM_001261401 NM_004622
RefSeq transcript (Entrez)NM_001261401 NM_004622
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_022135 NW_001838848 NW_004078008
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_022135 NW_001838848 NW_004078008
Consensus coding sequences : CCDS (NCBI)TSN
Cluster EST : UnigeneHs.75066 [ SRS ] Hs.75066 [ NCBI ]
CGAP (NCI)Hs.75066
Alternative Splicing : Fast-db (Paris)GSHG0016828
Alternative Splicing GalleryENSG00000211460
Gene ExpressionTSN [ NCBI-GEO ]   TSN [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15631 (SRS) Q15631 (Uniprot)
NextProtQ15631
With graphics : InterProQ15631
Splice isoforms : SwissVarQ15631(Swissvar)
Domains : Interpro (SRS)Translin    Translin_C    Translin_N   
Domains : Interpro (EBI)Translin    Translin_C    Translin_N   
Related proteins : CluSTrQ15631
Domain families : Pfam (SRS)Translin (PF01997)   
Domain families : Pfam (Sanger)Translin (PF01997)   
Domain families : Pfam (NCBI)pfam01997   
DMDM7247
Blocks (Seattle)Q15631
PDB (SRS)1J1J    3PJA    3QB5   
PDB (PDBSum)1J1J    3PJA    3QB5   
PDB (IMB)1J1J    3PJA    3QB5   
PDB (RSDB)1J1J    3PJA    3QB5   
Human Protein AtlasENSG00000211460
HPRD08993
IPIIPI00018768   IPI00922875   IPI00917623   IPI00916061   
Protein Interaction databases
DIP (DOE-UCLA)Q15631
IntAct (EBI)Q15631
FunCoupENSG00000211460
REACTOMETSN
Protein Interaction Database7247
BioGRIDTSN
InParanoidQ15631
Interologous Interaction database Q15631
IntegromeDBTSN
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSN
SNP (GeneSNP Utah)TSN
SNP : HGBaseTSN
Genetic variants : HAPMAPTSN
Somatic Mutations in Cancer : COSMICTSN 
CONAN: Copy Number AnalysisTSN 
Mutations and Diseases : HGMDTSN
OMIM600575   
GENETests600575   
Disease Genetic AssociationTSN
Huge Navigator TSN [HugePedia]  TSN [HugeCancerGEM]
Genomic VariantsTSN  TSN [DGVbeta]
snp3D : Map Gene to Disease7247
General knowledge
Homologs : HomoloGeneTSN
Homology/Alignments : Family Browser (UCSC)TSN
Phylogenetic Trees/Animal Genes : TreeFamTSN
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.- [ Enzyme-SRS ]   3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
Chemical/Protein Interactions : CTD7247
Chemical/Pharm GKB GenePA37047
Clinical trialTSN
Cancer Resource (Charite)ENSG00000211460
Ontology : AmiGODNA binding  mRNA binding  endonuclease activity  protein binding  nucleus  cytoplasm  DNA recombination  sequence-specific DNA binding  
Ontology : EGO-EBIDNA binding  mRNA binding  endonuclease activity  protein binding  nucleus  cytoplasm  DNA recombination  sequence-specific DNA binding  
Other databases
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
PubGeneTSN
iHOPTSN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:51 CEST 2013
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