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TSNARE1 (t-SNARE domain containing 1)

Identity

Alias (NCBI)-
HGNC (Hugo) TSNARE1
HGNC Alias symbFLJ31164
LocusID (NCBI) 203062
Atlas_Id 56409
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142212080 and ends at 142403182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLEKHA6 (1q32.1) / TSNARE1 (8q24.3)PTK2 (8q24.3) / TSNARE1 (8q24.3)SHANK3 (22q13.33) / TSNARE1 (8q24.3)
TECRL (4q13.1) / TSNARE1 (8q24.3)TSNARE1 (8q24.3) / ACTB (7p22.1)TSNARE1 (8q24.3) / COL22A1 (8q24.23)
TSNARE1 (8q24.3) / GDF6 (8q22.1)TSNARE1 (8q24.3) / MGLL (3q21.3)TSNARE1 (8q24.3) / RIF1 (2q23.3)
TSNARE1 (8q24.3) / TAB2 (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSNARE1   26437
Cards
Entrez_Gene (NCBI)TSNARE1    t-SNARE domain containing 1
Aliases
GeneCards (Weizmann)TSNARE1
Ensembl hg19 (Hinxton)ENSG00000171045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171045 [Gene_View]  ENSG00000171045 [Sequence]  chr8:142212080-142403182 [Contig_View]  TSNARE1 [Vega]
ICGC DataPortalENSG00000171045
TCGA cBioPortalTSNARE1
AceView (NCBI)TSNARE1
Genatlas (Paris)TSNARE1
SOURCE (Princeton)TSNARE1
Genetics Home Reference (NIH)TSNARE1
Genomic and cartography
GoldenPath hg38 (UCSC)TSNARE1  -     chr8:142212080-142403182 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSNARE1  -     8q24.3   [Description]    (hg19-Feb_2009)
GoldenPathTSNARE1 - 8q24.3 [CytoView hg19]  TSNARE1 - 8q24.3 [CytoView hg38]
ImmunoBaseENSG00000171045
Genome Data Viewer NCBITSNARE1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI203371 AK055726 BC065226 BC113556 BC126343
RefSeq transcript (Entrez)NM_001291931 NM_001363740 NM_001366901 NM_001366902 NM_001366903 NM_001366904 NM_145003
Consensus coding sequences : CCDS (NCBI)TSNARE1
Gene ExpressionTSNARE1 [ NCBI-GEO ]   TSNARE1 [ EBI - ARRAY_EXPRESS ]   TSNARE1 [ SEEK ]   TSNARE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSNARE1 [ Firebrowse - Broad ]
GenevisibleExpression of TSNARE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203062
GTEX Portal (Tissue expression)TSNARE1
Human Protein AtlasENSG00000171045-TSNARE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NA8
PhosPhoSitePlusQ96NA8
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)Myb_DNA-bind_5    SNARE    Syntaxin_N    T_SNARE_dom   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)    SNARE (PF05739)    Syntaxin_2 (PF14523)   
Domain families : Pfam (NCBI)pfam13873    pfam05739    pfam14523   
Domain families : Smart (EMBL)SynN (SM00503)  t_SNARE (SM00397)  
Conserved Domain (NCBI)TSNARE1
SuperfamilyQ96NA8
AlphaFold pdb e-kbQ96NA8   
Human Protein Atlas [tissue]ENSG00000171045-TSNARE1 [tissue]
HPRD08708
Protein Interaction databases
DIP (DOE-UCLA)Q96NA8
IntAct (EBI)Q96NA8
BioGRIDTSNARE1
STRING (EMBL)TSNARE1
ZODIACTSNARE1
Ontologies - Pathways
QuickGOQ96NA8
Ontology : AmiGOSNARE binding  SNAP receptor activity  intracellular protein transport  vesicle fusion  endomembrane system  integral component of membrane  SNARE complex  vesicle docking  
Ontology : EGO-EBISNARE binding  SNAP receptor activity  intracellular protein transport  vesicle fusion  endomembrane system  integral component of membrane  SNARE complex  vesicle docking  
NDEx NetworkTSNARE1
Atlas of Cancer Signalling NetworkTSNARE1
Wikipedia pathwaysTSNARE1
Orthology - Evolution
OrthoDB203062
GeneTree (enSembl)ENSG00000171045
Phylogenetic Trees/Animal Genes : TreeFamTSNARE1
Homologs : HomoloGeneTSNARE1
Homology/Alignments : Family Browser (UCSC)TSNARE1
Gene fusions - Rearrangements
Fusion : QuiverTSNARE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSNARE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSNARE1
dbVarTSNARE1
ClinVarTSNARE1
MonarchTSNARE1
1000_GenomesTSNARE1 
Exome Variant ServerTSNARE1
GNOMAD BrowserENSG00000171045
Varsome BrowserTSNARE1
ACMGTSNARE1 variants
VarityQ96NA8
Genomic Variants (DGV)TSNARE1 [DGVbeta]
DECIPHERTSNARE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSNARE1 
Mutations
ICGC Data PortalTSNARE1 
TCGA Data PortalTSNARE1 
Broad Tumor PortalTSNARE1
OASIS PortalTSNARE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSNARE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSNARE1
Mutations and Diseases : HGMDTSNARE1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSNARE1
DgiDB (Drug Gene Interaction Database)TSNARE1
DoCM (Curated mutations)TSNARE1
CIViC (Clinical Interpretations of Variants in Cancer)TSNARE1
Cancer3DTSNARE1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSNARE1
MedgenTSNARE1
Genetic Testing Registry TSNARE1
NextProtQ96NA8 [Medical]
GENETestsTSNARE1
Target ValidationTSNARE1
Huge Navigator TSNARE1 [HugePedia]
ClinGenTSNARE1
Clinical trials, drugs, therapy
MyCancerGenomeTSNARE1
Protein Interactions : CTDTSNARE1
Pharm GKB GenePA142670693
PharosQ96NA8
Clinical trialTSNARE1
Miscellaneous
canSAR (ICR)TSNARE1
HarmonizomeTSNARE1
DataMed IndexTSNARE1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSNARE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:37 CEST 2021

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