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TSNARE1 (t-SNARE domain containing 1)

Identity

Alias_symbol (synonym)FLJ31164
Other alias-
HGNC (Hugo) TSNARE1
LocusID (NCBI) 203062
Atlas_Id 56409
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142269462 and ends at 142403249 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLEKHA6 (1q32.1) / TSNARE1 (8q24.3)PTK2 (8q24.3) / TSNARE1 (8q24.3)SHANK3 (22q13.33) / TSNARE1 (8q24.3)
TECRL (4q13.1) / TSNARE1 (8q24.3)TSNARE1 (8q24.3) / ACTB (7p22.1)TSNARE1 (8q24.3) / COL22A1 (8q24.23)
TSNARE1 (8q24.3) / GDF6 (8q22.1)TSNARE1 (8q24.3) / MGLL (3q21.3)TSNARE1 (8q24.3) / RIF1 (2q23.3)
TSNARE1 (8q24.3) / TAB2 (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSNARE1   26437
Cards
Entrez_Gene (NCBI)TSNARE1  203062  t-SNARE domain containing 1
Aliases
GeneCards (Weizmann)TSNARE1
Ensembl hg19 (Hinxton)ENSG00000171045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171045 [Gene_View]  chr8:142269462-142403249 [Contig_View]  TSNARE1 [Vega]
ICGC DataPortalENSG00000171045
TCGA cBioPortalTSNARE1
AceView (NCBI)TSNARE1
Genatlas (Paris)TSNARE1
WikiGenes203062
SOURCE (Princeton)TSNARE1
Genetics Home Reference (NIH)TSNARE1
Genomic and cartography
GoldenPath hg38 (UCSC)TSNARE1  -     chr8:142269462-142403249 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSNARE1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblTSNARE1 - 8q24.3 [CytoView hg19]  TSNARE1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBITSNARE1 [Mapview hg19]  TSNARE1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI203371 AK055726 BC065226 BC113556 BC126343
RefSeq transcript (Entrez)NM_001291931 NM_145003
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSNARE1
Cluster EST : UnigeneHs.370931 [ NCBI ]
CGAP (NCI)Hs.370931
Alternative Splicing GalleryENSG00000171045
Gene ExpressionTSNARE1 [ NCBI-GEO ]   TSNARE1 [ EBI - ARRAY_EXPRESS ]   TSNARE1 [ SEEK ]   TSNARE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSNARE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203062
GTEX Portal (Tissue expression)TSNARE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NA8
Splice isoforms : SwissVarQ96NA8
PhosPhoSitePlusQ96NA8
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)Myb_DNA-bind_5    SNARE    Syntaxin_N    T_SNARE_dom   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)    SNARE (PF05739)   
Domain families : Pfam (NCBI)pfam13873    pfam05739   
Domain families : Smart (EMBL)SynN (SM00503)  t_SNARE (SM00397)  
Conserved Domain (NCBI)TSNARE1
DMDM Disease mutations203062
Blocks (Seattle)TSNARE1
SuperfamilyQ96NA8
Human Protein AtlasENSG00000171045
Peptide AtlasQ96NA8
HPRD08708
IPIIPI00043560   IPI00979447   IPI00439763   IPI00984437   IPI00974533   
Protein Interaction databases
DIP (DOE-UCLA)Q96NA8
IntAct (EBI)Q96NA8
FunCoupENSG00000171045
BioGRIDTSNARE1
STRING (EMBL)TSNARE1
ZODIACTSNARE1
Ontologies - Pathways
QuickGOQ96NA8
Ontology : AmiGOSNARE binding  SNAP receptor activity  intracellular protein transport  vesicle fusion  endomembrane system  integral component of membrane  SNARE complex  vesicle docking  
Ontology : EGO-EBISNARE binding  SNAP receptor activity  intracellular protein transport  vesicle fusion  endomembrane system  integral component of membrane  SNARE complex  vesicle docking  
NDEx NetworkTSNARE1
Atlas of Cancer Signalling NetworkTSNARE1
Wikipedia pathwaysTSNARE1
Orthology - Evolution
OrthoDB203062
GeneTree (enSembl)ENSG00000171045
Phylogenetic Trees/Animal Genes : TreeFamTSNARE1
HOVERGENQ96NA8
HOGENOMQ96NA8
Homologs : HomoloGeneTSNARE1
Homology/Alignments : Family Browser (UCSC)TSNARE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSNARE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSNARE1
dbVarTSNARE1
ClinVarTSNARE1
1000_GenomesTSNARE1 
Exome Variant ServerTSNARE1
ExAC (Exome Aggregation Consortium)TSNARE1 (select the gene name)
Genetic variants : HAPMAP203062
Genomic Variants (DGV)TSNARE1 [DGVbeta]
DECIPHERTSNARE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSNARE1 
Mutations
ICGC Data PortalTSNARE1 
TCGA Data PortalTSNARE1 
Broad Tumor PortalTSNARE1
OASIS PortalTSNARE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSNARE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSNARE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSNARE1
DgiDB (Drug Gene Interaction Database)TSNARE1
DoCM (Curated mutations)TSNARE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSNARE1 (select a term)
intoGenTSNARE1
Cancer3DTSNARE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSNARE1
Genetic Testing Registry TSNARE1
NextProtQ96NA8 [Medical]
TSGene203062
GENETestsTSNARE1
Target ValidationTSNARE1
Huge Navigator TSNARE1 [HugePedia]
snp3D : Map Gene to Disease203062
BioCentury BCIQTSNARE1
ClinGenTSNARE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203062
Chemical/Pharm GKB GenePA142670693
Clinical trialTSNARE1
Miscellaneous
canSAR (ICR)TSNARE1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSNARE1
EVEXTSNARE1
GoPubMedTSNARE1
iHOPTSNARE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:35 CEST 2017

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