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TSNAX (translin associated factor X)

Identity

Alias_symbol (synonym)TRAX
Other alias
HGNC (Hugo) TSNAX
LocusID (NCBI) 7257
Atlas_Id 42716
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231528653 and ends at 231566523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC25A3 (12q23.1) / TSNAX (1q42.2)TSNAX (1q42.2) / DISC1 (1q42.2)TSNAX (1q42.2) / ENOPH1 (4q21.22)
TSNAX (1q42.2) / HECA (6q24.1)TSNAX (1q42.2) / SLC25A3 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSNAX   12380
Cards
Entrez_Gene (NCBI)TSNAX  7257  translin associated factor X
AliasesTRAX
GeneCards (Weizmann)TSNAX
Ensembl hg19 (Hinxton)ENSG00000116918 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116918 [Gene_View]  chr1:231528653-231566523 [Contig_View]  TSNAX [Vega]
ICGC DataPortalENSG00000116918
TCGA cBioPortalTSNAX
AceView (NCBI)TSNAX
Genatlas (Paris)TSNAX
WikiGenes7257
SOURCE (Princeton)TSNAX
Genetics Home Reference (NIH)TSNAX
Genomic and cartography
GoldenPath hg38 (UCSC)TSNAX  -     chr1:231528653-231566523 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSNAX  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblTSNAX - 1q42.2 [CytoView hg19]  TSNAX - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBITSNAX [Mapview hg19]  TSNAX [Mapview hg38]
OMIM602964   
Gene and transcription
Genbank (Entrez)AK313068 BC010376 BC011797 BX537610 X95073
RefSeq transcript (Entrez)NM_005999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSNAX
Cluster EST : UnigeneHs.13318 [ NCBI ]
CGAP (NCI)Hs.13318
Alternative Splicing GalleryENSG00000116918
Gene ExpressionTSNAX [ NCBI-GEO ]   TSNAX [ EBI - ARRAY_EXPRESS ]   TSNAX [ SEEK ]   TSNAX [ MEM ]
Gene Expression Viewer (FireBrowse)TSNAX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7257
GTEX Portal (Tissue expression)TSNAX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99598   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99598  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99598
Splice isoforms : SwissVarQ99598
PhosPhoSitePlusQ99598
Domains : Interpro (EBI)Translin_C    Translin_fam    Translin_N   
Domain families : Pfam (Sanger)Translin (PF01997)   
Domain families : Pfam (NCBI)pfam01997   
Conserved Domain (NCBI)TSNAX
DMDM Disease mutations7257
Blocks (Seattle)TSNAX
PDB (SRS)3PJA    3QB5   
PDB (PDBSum)3PJA    3QB5   
PDB (IMB)3PJA    3QB5   
PDB (RSDB)3PJA    3QB5   
Structural Biology KnowledgeBase3PJA    3QB5   
SCOP (Structural Classification of Proteins)3PJA    3QB5   
CATH (Classification of proteins structures)3PJA    3QB5   
SuperfamilyQ99598
Human Protein AtlasENSG00000116918
Peptide AtlasQ99598
HPRD04270
IPIIPI00293350   IPI00647395   IPI00844588   
Protein Interaction databases
DIP (DOE-UCLA)Q99598
IntAct (EBI)Q99598
FunCoupENSG00000116918
BioGRIDTSNAX
STRING (EMBL)TSNAX
ZODIACTSNAX
Ontologies - Pathways
QuickGOQ99598
Ontology : AmiGODNA binding  RNA binding  protein binding  nucleus  Golgi apparatus  cytosol  multicellular organism development  spermatogenesis  protein transporter activity  protein transport  cell differentiation  gene silencing by RNA  sequence-specific DNA binding  metal ion binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIDNA binding  RNA binding  protein binding  nucleus  Golgi apparatus  cytosol  multicellular organism development  spermatogenesis  protein transporter activity  protein transport  cell differentiation  gene silencing by RNA  sequence-specific DNA binding  metal ion binding  perinuclear region of cytoplasm  
NDEx NetworkTSNAX
Atlas of Cancer Signalling NetworkTSNAX
Wikipedia pathwaysTSNAX
Orthology - Evolution
OrthoDB7257
GeneTree (enSembl)ENSG00000116918
Phylogenetic Trees/Animal Genes : TreeFamTSNAX
HOVERGENQ99598
HOGENOMQ99598
Homologs : HomoloGeneTSNAX
Homology/Alignments : Family Browser (UCSC)TSNAX
Gene fusions - Rearrangements
Fusion : MitelmanTSNAX/DISC1 [1q42.2/1q42.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSNAX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSNAX
dbVarTSNAX
ClinVarTSNAX
1000_GenomesTSNAX 
Exome Variant ServerTSNAX
ExAC (Exome Aggregation Consortium)TSNAX (select the gene name)
Genetic variants : HAPMAP7257
Genomic Variants (DGV)TSNAX [DGVbeta]
DECIPHERTSNAX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSNAX 
Mutations
ICGC Data PortalTSNAX 
TCGA Data PortalTSNAX 
Broad Tumor PortalTSNAX
OASIS PortalTSNAX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSNAX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSNAX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSNAX
DgiDB (Drug Gene Interaction Database)TSNAX
DoCM (Curated mutations)TSNAX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSNAX (select a term)
intoGenTSNAX
Cancer3DTSNAX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602964   
Orphanet
MedgenTSNAX
Genetic Testing Registry TSNAX
NextProtQ99598 [Medical]
TSGene7257
GENETestsTSNAX
Target ValidationTSNAX
Huge Navigator TSNAX [HugePedia]
snp3D : Map Gene to Disease7257
BioCentury BCIQTSNAX
ClinGenTSNAX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7257
Chemical/Pharm GKB GenePA37048
Clinical trialTSNAX
Miscellaneous
canSAR (ICR)TSNAX (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSNAX
EVEXTSNAX
GoPubMedTSNAX
iHOPTSNAX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:10:39 CEST 2017

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