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TSNAXIP1 (translin associated factor X interacting protein 1)

Identity

Alias (NCBI)TXI1
HGNC (Hugo) TSNAXIP1
HGNC Alias symbTXI1
HGNC Previous nametranslin-associated factor X interacting protein 1
LocusID (NCBI) 55815
Atlas_Id 75230
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67806889 and ends at 67828068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSNAXIP1 (16q22.1) / GPSM1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSNAXIP1   18586
Cards
Entrez_Gene (NCBI)TSNAXIP1    translin associated factor X interacting protein 1
AliasesTXI1
GeneCards (Weizmann)TSNAXIP1
Ensembl hg19 (Hinxton)ENSG00000102904 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102904 [Gene_View]  ENSG00000102904 [Sequence]  chr16:67806889-67828068 [Contig_View]  TSNAXIP1 [Vega]
ICGC DataPortalENSG00000102904
TCGA cBioPortalTSNAXIP1
AceView (NCBI)TSNAXIP1
Genatlas (Paris)TSNAXIP1
SOURCE (Princeton)TSNAXIP1
Genetics Home Reference (NIH)TSNAXIP1
Genomic and cartography
GoldenPath hg38 (UCSC)TSNAXIP1  -     chr16:67806889-67828068 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSNAXIP1  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTSNAXIP1 - 16q22.1 [CytoView hg19]  TSNAXIP1 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000102904
Genome Data Viewer NCBITSNAXIP1 [Mapview hg19]  
OMIM607720   
Gene and transcription
Genbank (Entrez)AF132730 AK027245 AK301920 AK302300 AK303841
RefSeq transcript (Entrez)NM_001288990 NM_001288991 NM_001288992 NM_001288993 NM_001288994 NM_001351158 NM_018430
Consensus coding sequences : CCDS (NCBI)TSNAXIP1
Gene ExpressionTSNAXIP1 [ NCBI-GEO ]   TSNAXIP1 [ EBI - ARRAY_EXPRESS ]   TSNAXIP1 [ SEEK ]   TSNAXIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSNAXIP1 [ Firebrowse - Broad ]
GenevisibleExpression of TSNAXIP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55815
GTEX Portal (Tissue expression)TSNAXIP1
Human Protein AtlasENSG00000102904-TSNAXIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAA8
PhosPhoSitePlusQ2TAA8
Domains : Interpro (EBI)TSNAXIP1_N   
Domain families : Pfam (Sanger)TSNAXIP1_N (PF15739)   
Domain families : Pfam (NCBI)pfam15739   
Conserved Domain (NCBI)TSNAXIP1
SuperfamilyQ2TAA8
AlphaFold pdb e-kbQ2TAA8   
Human Protein Atlas [tissue]ENSG00000102904-TSNAXIP1 [tissue]
HPRD09656
Protein Interaction databases
DIP (DOE-UCLA)Q2TAA8
IntAct (EBI)Q2TAA8
BioGRIDTSNAXIP1
STRING (EMBL)TSNAXIP1
ZODIACTSNAXIP1
Ontologies - Pathways
QuickGOQ2TAA8
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytoplasm  multicellular organism development  spermatogenesis  biological_process  cell differentiation  perinuclear region of cytoplasm  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytoplasm  multicellular organism development  spermatogenesis  biological_process  cell differentiation  perinuclear region of cytoplasm  
NDEx NetworkTSNAXIP1
Atlas of Cancer Signalling NetworkTSNAXIP1
Wikipedia pathwaysTSNAXIP1
Orthology - Evolution
OrthoDB55815
GeneTree (enSembl)ENSG00000102904
Phylogenetic Trees/Animal Genes : TreeFamTSNAXIP1
Homologs : HomoloGeneTSNAXIP1
Homology/Alignments : Family Browser (UCSC)TSNAXIP1
Gene fusions - Rearrangements
Fusion : QuiverTSNAXIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSNAXIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSNAXIP1
dbVarTSNAXIP1
ClinVarTSNAXIP1
MonarchTSNAXIP1
1000_GenomesTSNAXIP1 
Exome Variant ServerTSNAXIP1
GNOMAD BrowserENSG00000102904
Varsome BrowserTSNAXIP1
ACMGTSNAXIP1 variants
VarityQ2TAA8
Genomic Variants (DGV)TSNAXIP1 [DGVbeta]
DECIPHERTSNAXIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSNAXIP1 
Mutations
ICGC Data PortalTSNAXIP1 
TCGA Data PortalTSNAXIP1 
Broad Tumor PortalTSNAXIP1
OASIS PortalTSNAXIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSNAXIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSNAXIP1
Mutations and Diseases : HGMDTSNAXIP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSNAXIP1
DgiDB (Drug Gene Interaction Database)TSNAXIP1
DoCM (Curated mutations)TSNAXIP1
CIViC (Clinical Interpretations of Variants in Cancer)TSNAXIP1
Cancer3DTSNAXIP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607720   
Orphanet
DisGeNETTSNAXIP1
MedgenTSNAXIP1
Genetic Testing Registry TSNAXIP1
NextProtQ2TAA8 [Medical]
GENETestsTSNAXIP1
Target ValidationTSNAXIP1
Huge Navigator TSNAXIP1 [HugePedia]
ClinGenTSNAXIP1
Clinical trials, drugs, therapy
MyCancerGenomeTSNAXIP1
Protein Interactions : CTDTSNAXIP1
Pharm GKB GenePA134961990
PharosQ2TAA8
Clinical trialTSNAXIP1
Miscellaneous
canSAR (ICR)TSNAXIP1
HarmonizomeTSNAXIP1
DataMed IndexTSNAXIP1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSNAXIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:08 CEST 2021

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