Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSNAXIP1 (translin-associated factor X interacting protein 1)

Identity

Alias_namestranslin-associated factor X interacting protein 1
Alias_symbol (synonym)TXI1
Other alias
HGNC (Hugo) TSNAXIP1
LocusID (NCBI) 55815
Atlas_Id 75230
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67840781 and ends at 67861971 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSNAXIP1 (16q22.1) / GPSM1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSNAXIP1   18586
Cards
Entrez_Gene (NCBI)TSNAXIP1  55815  translin-associated factor X interacting protein 1
AliasesTXI1
GeneCards (Weizmann)TSNAXIP1
Ensembl hg19 (Hinxton)ENSG00000102904 [Gene_View]  chr16:67840781-67861971 [Contig_View]  TSNAXIP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102904 [Gene_View]  chr16:67840781-67861971 [Contig_View]  TSNAXIP1 [Vega]
ICGC DataPortalENSG00000102904
TCGA cBioPortalTSNAXIP1
AceView (NCBI)TSNAXIP1
Genatlas (Paris)TSNAXIP1
WikiGenes55815
SOURCE (Princeton)TSNAXIP1
Genetics Home Reference (NIH)TSNAXIP1
Genomic and cartography
GoldenPath hg19 (UCSC)TSNAXIP1  -     chr16:67840781-67861971 +  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSNAXIP1  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblTSNAXIP1 - 16q22.1 [CytoView hg19]  TSNAXIP1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBITSNAXIP1 [Mapview hg19]  TSNAXIP1 [Mapview hg38]
OMIM607720   
Gene and transcription
Genbank (Entrez)AF132730 AK027245 AK301920 AK302300 AK303841
RefSeq transcript (Entrez)NM_001288990 NM_001288991 NM_001288992 NM_001288993 NM_001288994 NM_018430
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)TSNAXIP1
Cluster EST : UnigeneHs.632212 [ NCBI ]
CGAP (NCI)Hs.632212
Alternative Splicing GalleryENSG00000102904
Gene ExpressionTSNAXIP1 [ NCBI-GEO ]   TSNAXIP1 [ EBI - ARRAY_EXPRESS ]   TSNAXIP1 [ SEEK ]   TSNAXIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSNAXIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55815
GTEX Portal (Tissue expression)TSNAXIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAA8
Splice isoforms : SwissVarQ2TAA8
PhosPhoSitePlusQ2TAA8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSNAXIP1
DMDM Disease mutations55815
Blocks (Seattle)TSNAXIP1
SuperfamilyQ2TAA8
Human Protein AtlasENSG00000102904
Peptide AtlasQ2TAA8
HPRD09656
IPIIPI00157828   IPI00783230   IPI00939652   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAA8
IntAct (EBI)Q2TAA8
FunCoupENSG00000102904
BioGRIDTSNAXIP1
STRING (EMBL)TSNAXIP1
ZODIACTSNAXIP1
Ontologies - Pathways
QuickGOQ2TAA8
Ontology : AmiGOmolecular_function  cellular_component  multicellular organismal development  spermatogenesis  biological_process  cell differentiation  perinuclear region of cytoplasm  
Ontology : EGO-EBImolecular_function  cellular_component  multicellular organismal development  spermatogenesis  biological_process  cell differentiation  perinuclear region of cytoplasm  
NDEx NetworkTSNAXIP1
Atlas of Cancer Signalling NetworkTSNAXIP1
Wikipedia pathwaysTSNAXIP1
Orthology - Evolution
OrthoDB55815
GeneTree (enSembl)ENSG00000102904
Phylogenetic Trees/Animal Genes : TreeFamTSNAXIP1
HOVERGENQ2TAA8
HOGENOMQ2TAA8
Homologs : HomoloGeneTSNAXIP1
Homology/Alignments : Family Browser (UCSC)TSNAXIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSNAXIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSNAXIP1
dbVarTSNAXIP1
ClinVarTSNAXIP1
1000_GenomesTSNAXIP1 
Exome Variant ServerTSNAXIP1
ExAC (Exome Aggregation Consortium)TSNAXIP1 (select the gene name)
Genetic variants : HAPMAP55815
Genomic Variants (DGV)TSNAXIP1 [DGVbeta]
DECIPHER (Syndromes)16:67840781-67861971  ENSG00000102904
CONAN: Copy Number AnalysisTSNAXIP1 
Mutations
ICGC Data PortalTSNAXIP1 
TCGA Data PortalTSNAXIP1 
Broad Tumor PortalTSNAXIP1
OASIS PortalTSNAXIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSNAXIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSNAXIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSNAXIP1
DgiDB (Drug Gene Interaction Database)TSNAXIP1
DoCM (Curated mutations)TSNAXIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSNAXIP1 (select a term)
intoGenTSNAXIP1
Cancer3DTSNAXIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607720   
Orphanet
MedgenTSNAXIP1
Genetic Testing Registry TSNAXIP1
NextProtQ2TAA8 [Medical]
TSGene55815
GENETestsTSNAXIP1
Huge Navigator TSNAXIP1 [HugePedia]
snp3D : Map Gene to Disease55815
BioCentury BCIQTSNAXIP1
ClinGenTSNAXIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55815
Chemical/Pharm GKB GenePA134961990
Clinical trialTSNAXIP1
Miscellaneous
canSAR (ICR)TSNAXIP1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSNAXIP1
EVEXTSNAXIP1
GoPubMedTSNAXIP1
iHOPTSNAXIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:57 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.