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TSPAN10 (tetraspanin 10)

Identity

Alias (NCBI)OCSP
HGNC (Hugo) TSPAN10
HGNC Alias symbOCSP
HGNC Alias nameoculospanin
LocusID (NCBI) 83882
Atlas_Id 75231
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81642305 and ends at 81648755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ITGB4 (17q25.1) / TSPAN10 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN10   29942
Cards
Entrez_Gene (NCBI)TSPAN10    tetraspanin 10
AliasesOCSP
GeneCards (Weizmann)TSPAN10
Ensembl hg19 (Hinxton)ENSG00000182612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182612 [Gene_View]  ENSG00000182612 [Sequence]  chr17:81642305-81648755 [Contig_View]  TSPAN10 [Vega]
ICGC DataPortalENSG00000182612
TCGA cBioPortalTSPAN10
AceView (NCBI)TSPAN10
Genatlas (Paris)TSPAN10
SOURCE (Princeton)TSPAN10
Genetics Home Reference (NIH)TSPAN10
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN10  -     chr17:81642305-81648755 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN10  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN10 - 17q25.3 [CytoView hg19]  TSPAN10 - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000182612
Genome Data Viewer NCBITSPAN10 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB593081 AB593082 AF325213 AK055832 AK096926
RefSeq transcript (Entrez)NM_001290212 NM_031945
Consensus coding sequences : CCDS (NCBI)TSPAN10
Gene ExpressionTSPAN10 [ NCBI-GEO ]   TSPAN10 [ EBI - ARRAY_EXPRESS ]   TSPAN10 [ SEEK ]   TSPAN10 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN10 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83882
GTEX Portal (Tissue expression)TSPAN10
Human Protein AtlasENSG00000182612-TSPAN10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Z9
PhosPhoSitePlusQ9H1Z9
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN10
SuperfamilyQ9H1Z9
AlphaFold pdb e-kbQ9H1Z9   
Human Protein Atlas [tissue]ENSG00000182612-TSPAN10 [tissue]
HPRD17655
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Z9
IntAct (EBI)Q9H1Z9
BioGRIDTSPAN10
STRING (EMBL)TSPAN10
ZODIACTSPAN10
Ontologies - Pathways
QuickGOQ9H1Z9
Ontology : AmiGOintegral component of plasma membrane  enzyme binding  establishment of protein localization to organelle  
Ontology : EGO-EBIintegral component of plasma membrane  enzyme binding  establishment of protein localization to organelle  
NDEx NetworkTSPAN10
Atlas of Cancer Signalling NetworkTSPAN10
Wikipedia pathwaysTSPAN10
Orthology - Evolution
OrthoDB83882
GeneTree (enSembl)ENSG00000182612
Phylogenetic Trees/Animal Genes : TreeFamTSPAN10
Homologs : HomoloGeneTSPAN10
Homology/Alignments : Family Browser (UCSC)TSPAN10
Gene fusions - Rearrangements
Fusion : QuiverTSPAN10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN10
dbVarTSPAN10
ClinVarTSPAN10
MonarchTSPAN10
1000_GenomesTSPAN10 
Exome Variant ServerTSPAN10
GNOMAD BrowserENSG00000182612
Varsome BrowserTSPAN10
ACMGTSPAN10 variants
VarityQ9H1Z9
Genomic Variants (DGV)TSPAN10 [DGVbeta]
DECIPHERTSPAN10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN10 
Mutations
ICGC Data PortalTSPAN10 
TCGA Data PortalTSPAN10 
Broad Tumor PortalTSPAN10
OASIS PortalTSPAN10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN10
Mutations and Diseases : HGMDTSPAN10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN10
DgiDB (Drug Gene Interaction Database)TSPAN10
DoCM (Curated mutations)TSPAN10
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN10
Cancer3DTSPAN10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPAN10
MedgenTSPAN10
Genetic Testing Registry TSPAN10
NextProtQ9H1Z9 [Medical]
GENETestsTSPAN10
Target ValidationTSPAN10
Huge Navigator TSPAN10 [HugePedia]
ClinGenTSPAN10
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN10
Protein Interactions : CTDTSPAN10
Pharm GKB GenePA142670686
PharosQ9H1Z9
Clinical trialTSPAN10
Miscellaneous
canSAR (ICR)TSPAN10
HarmonizomeTSPAN10
DataMed IndexTSPAN10
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:08 CEST 2021

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