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TSPAN10 (tetraspanin 10)

Identity

Alias_symbol (synonym)OCSP
Other alias
HGNC (Hugo) TSPAN10
LocusID (NCBI) 83882
Atlas_Id 75231
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81637171 and ends at 81648755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITGB4 (17q25.1) / TSPAN10 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN10   29942
Cards
Entrez_Gene (NCBI)TSPAN10  83882  tetraspanin 10
AliasesOCSP
GeneCards (Weizmann)TSPAN10
Ensembl hg19 (Hinxton)ENSG00000182612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182612 [Gene_View]  chr17:81637171-81648755 [Contig_View]  TSPAN10 [Vega]
ICGC DataPortalENSG00000182612
TCGA cBioPortalTSPAN10
AceView (NCBI)TSPAN10
Genatlas (Paris)TSPAN10
WikiGenes83882
SOURCE (Princeton)TSPAN10
Genetics Home Reference (NIH)TSPAN10
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN10  -     chr17:81637171-81648755 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN10  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblTSPAN10 - 17q25.3 [CytoView hg19]  TSPAN10 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBITSPAN10 [Mapview hg19]  TSPAN10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593081 AB593082 AF325213 AK055832 AK096926
RefSeq transcript (Entrez)NM_001290212 NM_031945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN10
Cluster EST : UnigeneHs.740811 [ NCBI ]
CGAP (NCI)Hs.740811
Alternative Splicing GalleryENSG00000182612
Gene ExpressionTSPAN10 [ NCBI-GEO ]   TSPAN10 [ EBI - ARRAY_EXPRESS ]   TSPAN10 [ SEEK ]   TSPAN10 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83882
GTEX Portal (Tissue expression)TSPAN10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Z9
Splice isoforms : SwissVarQ9H1Z9
PhosPhoSitePlusQ9H1Z9
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN10
DMDM Disease mutations83882
Blocks (Seattle)TSPAN10
SuperfamilyQ9H1Z9
Human Protein AtlasENSG00000182612
Peptide AtlasQ9H1Z9
HPRD17655
IPIIPI00296805   IPI01011173   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Z9
IntAct (EBI)Q9H1Z9
FunCoupENSG00000182612
BioGRIDTSPAN10
STRING (EMBL)TSPAN10
ZODIACTSPAN10
Ontologies - Pathways
QuickGOQ9H1Z9
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  enzyme binding  establishment of protein localization to organelle  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  enzyme binding  establishment of protein localization to organelle  
NDEx NetworkTSPAN10
Atlas of Cancer Signalling NetworkTSPAN10
Wikipedia pathwaysTSPAN10
Orthology - Evolution
OrthoDB83882
GeneTree (enSembl)ENSG00000182612
Phylogenetic Trees/Animal Genes : TreeFamTSPAN10
HOVERGENQ9H1Z9
HOGENOMQ9H1Z9
Homologs : HomoloGeneTSPAN10
Homology/Alignments : Family Browser (UCSC)TSPAN10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN10
dbVarTSPAN10
ClinVarTSPAN10
1000_GenomesTSPAN10 
Exome Variant ServerTSPAN10
ExAC (Exome Aggregation Consortium)TSPAN10 (select the gene name)
Genetic variants : HAPMAP83882
Genomic Variants (DGV)TSPAN10 [DGVbeta]
DECIPHERTSPAN10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN10 
Mutations
ICGC Data PortalTSPAN10 
TCGA Data PortalTSPAN10 
Broad Tumor PortalTSPAN10
OASIS PortalTSPAN10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSPAN10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN10
DgiDB (Drug Gene Interaction Database)TSPAN10
DoCM (Curated mutations)TSPAN10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN10 (select a term)
intoGenTSPAN10
Cancer3DTSPAN10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPAN10
Genetic Testing Registry TSPAN10
NextProtQ9H1Z9 [Medical]
TSGene83882
GENETestsTSPAN10
Target ValidationTSPAN10
Huge Navigator TSPAN10 [HugePedia]
snp3D : Map Gene to Disease83882
BioCentury BCIQTSPAN10
ClinGenTSPAN10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83882
Chemical/Pharm GKB GenePA142670686
Clinical trialTSPAN10
Miscellaneous
canSAR (ICR)TSPAN10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN10
EVEXTSPAN10
GoPubMedTSPAN10
iHOPTSPAN10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:42 CEST 2017

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