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TSPAN11 (tetraspanin 11)

Identity

Other aliasVSSW1971
HGNC (Hugo) TSPAN11
LocusID (NCBI) 441631
Atlas_Id 54729
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 30926904 and ends at 30996602 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCAT1 (12p12.1) / TSPAN11 (12p11.21)ERBB2 (17q12) / TSPAN11 (12p11.21)NFE2L1 (17q21.32) / TSPAN11 (12p11.21)
TSPAN11 (12p11.21) / TRIM29 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN11   30795
Cards
Entrez_Gene (NCBI)TSPAN11  441631  tetraspanin 11
AliasesVSSW1971
GeneCards (Weizmann)TSPAN11
Ensembl hg19 (Hinxton)ENSG00000110900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110900 [Gene_View]  chr12:30926904-30996602 [Contig_View]  TSPAN11 [Vega]
ICGC DataPortalENSG00000110900
TCGA cBioPortalTSPAN11
AceView (NCBI)TSPAN11
Genatlas (Paris)TSPAN11
WikiGenes441631
SOURCE (Princeton)TSPAN11
Genetics Home Reference (NIH)TSPAN11
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN11  -     chr12:30926904-30996602 +  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN11  -     12p11.21   [Description]    (hg19-Feb_2009)
EnsemblTSPAN11 - 12p11.21 [CytoView hg19]  TSPAN11 - 12p11.21 [CytoView hg38]
Mapping of homologs : NCBITSPAN11 [Mapview hg19]  TSPAN11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024399 AK293947 AK300920 AY358804 BC084571
RefSeq transcript (Entrez)NM_001080509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN11
Cluster EST : UnigeneHs.505141 [ NCBI ]
CGAP (NCI)Hs.505141
Alternative Splicing GalleryENSG00000110900
Gene ExpressionTSPAN11 [ NCBI-GEO ]   TSPAN11 [ EBI - ARRAY_EXPRESS ]   TSPAN11 [ SEEK ]   TSPAN11 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441631
GTEX Portal (Tissue expression)TSPAN11
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L157   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L157
Splice isoforms : SwissVarA1L157
PhosPhoSitePlusA1L157
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN11
DMDM Disease mutations441631
Blocks (Seattle)TSPAN11
SuperfamilyA1L157
Human Protein AtlasENSG00000110900
Peptide AtlasA1L157
IPIIPI00457075   IPI01010808   IPI00432184   IPI01011760   
Protein Interaction databases
DIP (DOE-UCLA)A1L157
IntAct (EBI)A1L157
FunCoupENSG00000110900
BioGRIDTSPAN11
STRING (EMBL)TSPAN11
ZODIACTSPAN11
Ontologies - Pathways
QuickGOA1L157
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  
NDEx NetworkTSPAN11
Atlas of Cancer Signalling NetworkTSPAN11
Wikipedia pathwaysTSPAN11
Orthology - Evolution
OrthoDB441631
GeneTree (enSembl)ENSG00000110900
Phylogenetic Trees/Animal Genes : TreeFamTSPAN11
HOVERGENA1L157
HOGENOMA1L157
Homologs : HomoloGeneTSPAN11
Homology/Alignments : Family Browser (UCSC)TSPAN11
Gene fusions - Rearrangements
Fusion : MitelmanERBB2/TSPAN11 [17q12/12p11.21]  [t(12;17)(p11;q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN11
dbVarTSPAN11
ClinVarTSPAN11
1000_GenomesTSPAN11 
Exome Variant ServerTSPAN11
ExAC (Exome Aggregation Consortium)TSPAN11 (select the gene name)
Genetic variants : HAPMAP441631
Genomic Variants (DGV)TSPAN11 [DGVbeta]
DECIPHERTSPAN11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN11 
Mutations
ICGC Data PortalTSPAN11 
TCGA Data PortalTSPAN11 
Broad Tumor PortalTSPAN11
OASIS PortalTSPAN11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN11
DgiDB (Drug Gene Interaction Database)TSPAN11
DoCM (Curated mutations)TSPAN11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN11 (select a term)
intoGenTSPAN11
Cancer3DTSPAN11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPAN11
Genetic Testing Registry TSPAN11
NextProtA1L157 [Medical]
TSGene441631
GENETestsTSPAN11
Target ValidationTSPAN11
Huge Navigator TSPAN11 [HugePedia]
snp3D : Map Gene to Disease441631
BioCentury BCIQTSPAN11
ClinGenTSPAN11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441631
Chemical/Pharm GKB GenePA142670687
Clinical trialTSPAN11
Miscellaneous
canSAR (ICR)TSPAN11 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN11
EVEXTSPAN11
GoPubMedTSPAN11
iHOPTSPAN11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:35 CEST 2017

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