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TSPAN13 (tetraspanin 13)

Identity

Alias_namesTM4SF13
transmembrane 4 superfamily member 13
Alias_symbol (synonym)NET-6
Other aliasNET6
HGNC (Hugo) TSPAN13
LocusID (NCBI) 27075
Atlas_Id 43759
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 16793351 and ends at 16824161 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSPAN13 (7p21.1) / PAK1IP1 (6p24.2)TSPAN13 (7p21.1) / RNF130 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN13   21643
Cards
Entrez_Gene (NCBI)TSPAN13  27075  tetraspanin 13
AliasesNET-6; NET6; TM4SF13
GeneCards (Weizmann)TSPAN13
Ensembl hg19 (Hinxton)ENSG00000106537 [Gene_View]  chr7:16793351-16824161 [Contig_View]  TSPAN13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106537 [Gene_View]  chr7:16793351-16824161 [Contig_View]  TSPAN13 [Vega]
ICGC DataPortalENSG00000106537
TCGA cBioPortalTSPAN13
AceView (NCBI)TSPAN13
Genatlas (Paris)TSPAN13
WikiGenes27075
SOURCE (Princeton)TSPAN13
Genetics Home Reference (NIH)TSPAN13
Genomic and cartography
GoldenPath hg19 (UCSC)TSPAN13  -     chr7:16793351-16824161 +  7p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPAN13  -     7p21.1   [Description]    (hg38-Dec_2013)
EnsemblTSPAN13 - 7p21.1 [CytoView hg19]  TSPAN13 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBITSPAN13 [Mapview hg19]  TSPAN13 [Mapview hg38]
OMIM613139   
Gene and transcription
Genbank (Entrez)AF100759 AF120265 AK026587 AK075475 AK093487
RefSeq transcript (Entrez)NM_014399
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)TSPAN13
Cluster EST : UnigeneHs.364544 [ NCBI ]
CGAP (NCI)Hs.364544
Alternative Splicing GalleryENSG00000106537
Gene ExpressionTSPAN13 [ NCBI-GEO ]   TSPAN13 [ EBI - ARRAY_EXPRESS ]   TSPAN13 [ SEEK ]   TSPAN13 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27075
GTEX Portal (Tissue expression)TSPAN13
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95857   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95857  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95857
Splice isoforms : SwissVarO95857
PhosPhoSitePlusO95857
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN13
DMDM Disease mutations27075
Blocks (Seattle)TSPAN13
SuperfamilyO95857
Human Protein AtlasENSG00000106537
Peptide AtlasO95857
HPRD15510
IPIIPI00000735   
Protein Interaction databases
DIP (DOE-UCLA)O95857
IntAct (EBI)O95857
FunCoupENSG00000106537
BioGRIDTSPAN13
STRING (EMBL)TSPAN13
ZODIACTSPAN13
Ontologies - Pathways
QuickGOO95857
Ontology : AmiGOcalcium channel regulator activity  integral component of plasma membrane  cell surface receptor signaling pathway  membrane  regulation of calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium channel regulator activity  integral component of plasma membrane  cell surface receptor signaling pathway  membrane  regulation of calcium ion transmembrane transport  
NDEx NetworkTSPAN13
Atlas of Cancer Signalling NetworkTSPAN13
Wikipedia pathwaysTSPAN13
Orthology - Evolution
OrthoDB27075
GeneTree (enSembl)ENSG00000106537
Phylogenetic Trees/Animal Genes : TreeFamTSPAN13
HOVERGENO95857
HOGENOMO95857
Homologs : HomoloGeneTSPAN13
Homology/Alignments : Family Browser (UCSC)TSPAN13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN13
dbVarTSPAN13
ClinVarTSPAN13
1000_GenomesTSPAN13 
Exome Variant ServerTSPAN13
ExAC (Exome Aggregation Consortium)TSPAN13 (select the gene name)
Genetic variants : HAPMAP27075
Genomic Variants (DGV)TSPAN13 [DGVbeta]
DECIPHER (Syndromes)7:16793351-16824161  ENSG00000106537
CONAN: Copy Number AnalysisTSPAN13 
Mutations
ICGC Data PortalTSPAN13 
TCGA Data PortalTSPAN13 
Broad Tumor PortalTSPAN13
OASIS PortalTSPAN13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN13
DgiDB (Drug Gene Interaction Database)TSPAN13
DoCM (Curated mutations)TSPAN13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN13 (select a term)
intoGenTSPAN13
Cancer3DTSPAN13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613139   
Orphanet
MedgenTSPAN13
Genetic Testing Registry TSPAN13
NextProtO95857 [Medical]
TSGene27075
GENETestsTSPAN13
Huge Navigator TSPAN13 [HugePedia]
snp3D : Map Gene to Disease27075
BioCentury BCIQTSPAN13
ClinGenTSPAN13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27075
Chemical/Pharm GKB GenePA134868624
Clinical trialTSPAN13
Miscellaneous
canSAR (ICR)TSPAN13 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN13
EVEXTSPAN13
GoPubMedTSPAN13
iHOPTSPAN13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:41 CEST 2017

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