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TSPAN13 (tetraspanin 13)

Identity

Alias (NCBI)NET-6
NET6
TM4SF13
HGNC (Hugo) TSPAN13
HGNC Alias symbNET-6
HGNC Previous nameTM4SF13
HGNC Previous nametransmembrane 4 superfamily member 13
LocusID (NCBI) 27075
Atlas_Id 43759
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 16753755 and ends at 16784536 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSPAN13 (7p21.1) / PAK1IP1 (6p24.2)TSPAN13 (7p21.1) / RNF130 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN13   21643
Cards
Entrez_Gene (NCBI)TSPAN13    tetraspanin 13
AliasesNET-6; NET6; TM4SF13
GeneCards (Weizmann)TSPAN13
Ensembl hg19 (Hinxton)ENSG00000106537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106537 [Gene_View]  ENSG00000106537 [Sequence]  chr7:16753755-16784536 [Contig_View]  TSPAN13 [Vega]
ICGC DataPortalENSG00000106537
TCGA cBioPortalTSPAN13
AceView (NCBI)TSPAN13
Genatlas (Paris)TSPAN13
SOURCE (Princeton)TSPAN13
Genetics Home Reference (NIH)TSPAN13
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN13  -     chr7:16753755-16784536 +  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN13  -     7p21.1   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN13 - 7p21.1 [CytoView hg19]  TSPAN13 - 7p21.1 [CytoView hg38]
ImmunoBaseENSG00000106537
Genome Data Viewer NCBITSPAN13 [Mapview hg19]  
OMIM613139   
Gene and transcription
Genbank (Entrez)AF100759 AF120265 AK026587 AK075475 AK093487
RefSeq transcript (Entrez)NM_014399
Consensus coding sequences : CCDS (NCBI)TSPAN13
Gene ExpressionTSPAN13 [ NCBI-GEO ]   TSPAN13 [ EBI - ARRAY_EXPRESS ]   TSPAN13 [ SEEK ]   TSPAN13 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN13 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27075
GTEX Portal (Tissue expression)TSPAN13
Human Protein AtlasENSG00000106537-TSPAN13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95857   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95857  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95857
PhosPhoSitePlusO95857
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN13
SuperfamilyO95857
AlphaFold pdb e-kbO95857   
Human Protein Atlas [tissue]ENSG00000106537-TSPAN13 [tissue]
HPRD15510
Protein Interaction databases
DIP (DOE-UCLA)O95857
IntAct (EBI)O95857
BioGRIDTSPAN13
STRING (EMBL)TSPAN13
ZODIACTSPAN13
Ontologies - Pathways
QuickGOO95857
Ontology : AmiGOcalcium channel regulator activity  integral component of plasma membrane  membrane  regulation of calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium channel regulator activity  integral component of plasma membrane  membrane  regulation of calcium ion transmembrane transport  
NDEx NetworkTSPAN13
Atlas of Cancer Signalling NetworkTSPAN13
Wikipedia pathwaysTSPAN13
Orthology - Evolution
OrthoDB27075
GeneTree (enSembl)ENSG00000106537
Phylogenetic Trees/Animal Genes : TreeFamTSPAN13
Homologs : HomoloGeneTSPAN13
Homology/Alignments : Family Browser (UCSC)TSPAN13
Gene fusions - Rearrangements
Fusion : QuiverTSPAN13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN13
dbVarTSPAN13
ClinVarTSPAN13
MonarchTSPAN13
1000_GenomesTSPAN13 
Exome Variant ServerTSPAN13
GNOMAD BrowserENSG00000106537
Varsome BrowserTSPAN13
ACMGTSPAN13 variants
VarityO95857
Genomic Variants (DGV)TSPAN13 [DGVbeta]
DECIPHERTSPAN13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN13 
Mutations
ICGC Data PortalTSPAN13 
TCGA Data PortalTSPAN13 
Broad Tumor PortalTSPAN13
OASIS PortalTSPAN13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN13
Mutations and Diseases : HGMDTSPAN13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN13
DgiDB (Drug Gene Interaction Database)TSPAN13
DoCM (Curated mutations)TSPAN13
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN13
Cancer3DTSPAN13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613139   
Orphanet
DisGeNETTSPAN13
MedgenTSPAN13
Genetic Testing Registry TSPAN13
NextProtO95857 [Medical]
GENETestsTSPAN13
Target ValidationTSPAN13
Huge Navigator TSPAN13 [HugePedia]
ClinGenTSPAN13
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN13
Protein Interactions : CTDTSPAN13
Pharm GKB GenePA134868624
PharosO95857
Clinical trialTSPAN13
Miscellaneous
canSAR (ICR)TSPAN13
HarmonizomeTSPAN13
DataMed IndexTSPAN13
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:38 CEST 2021

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