Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPAN15 (tetraspanin 15)

Identity

Alias_namesTM4SF15
transmembrane 4 superfamily member 15
Alias_symbol (synonym)NET-7
Other alias2700063A19Rik
NET7
HGNC (Hugo) TSPAN15
LocusID (NCBI) 23555
Atlas_Id 75232
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71211226 and ends at 71267423 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD276 (15q24.1) / TSPAN15 (10q22.1)SLC39A14 (8p21.3) / TSPAN15 (10q22.1)TSPAN15 (10q22.1) / SAMD8 (10q22.2)
TSPAN15 (10q22.1) / VPS26A (10q22.1)TSPAN15 VPS26ATSPAN15 SAMD8

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN15   23298
Cards
Entrez_Gene (NCBI)TSPAN15  23555  tetraspanin 15
Aliases2700063A19Rik; NET-7; NET7; TM4SF15
GeneCards (Weizmann)TSPAN15
Ensembl hg19 (Hinxton)ENSG00000099282 [Gene_View]  chr10:71211226-71267423 [Contig_View]  TSPAN15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000099282 [Gene_View]  chr10:71211226-71267423 [Contig_View]  TSPAN15 [Vega]
ICGC DataPortalENSG00000099282
TCGA cBioPortalTSPAN15
AceView (NCBI)TSPAN15
Genatlas (Paris)TSPAN15
WikiGenes23555
SOURCE (Princeton)TSPAN15
Genetics Home Reference (NIH)TSPAN15
Genomic and cartography
GoldenPath hg19 (UCSC)TSPAN15  -     chr10:71211226-71267423 +  10q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPAN15  -     10q22.1   [Description]    (hg38-Dec_2013)
EnsemblTSPAN15 - 10q22.1 [CytoView hg19]  TSPAN15 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBITSPAN15 [Mapview hg19]  TSPAN15 [Mapview hg38]
OMIM613140   
Gene and transcription
Genbank (Entrez)AF120266 BC003157 BC004161 BI457070 HQ447159
RefSeq transcript (Entrez)NM_012339
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)TSPAN15
Cluster EST : UnigeneHs.499941 [ NCBI ]
CGAP (NCI)Hs.499941
Alternative Splicing GalleryENSG00000099282
Gene ExpressionTSPAN15 [ NCBI-GEO ]   TSPAN15 [ EBI - ARRAY_EXPRESS ]   TSPAN15 [ SEEK ]   TSPAN15 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23555
GTEX Portal (Tissue expression)TSPAN15
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95858   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95858  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95858
Splice isoforms : SwissVarO95858
PhosPhoSitePlusO95858
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN15
DMDM Disease mutations23555
Blocks (Seattle)TSPAN15
SuperfamilyO95858
Human Protein AtlasENSG00000099282
Peptide AtlasO95858
HPRD15511
IPIIPI00000736   IPI00879830   
Protein Interaction databases
DIP (DOE-UCLA)O95858
IntAct (EBI)O95858
FunCoupENSG00000099282
BioGRIDTSPAN15
STRING (EMBL)TSPAN15
ZODIACTSPAN15
Ontologies - Pathways
QuickGOO95858
Ontology : AmiGOprotein binding  plasma membrane  regulation of Notch signaling pathway  cell surface  integral component of membrane  enzyme binding  protein maturation  extracellular exosome  establishment of protein localization to plasma membrane  tetraspanin-enriched microdomain  
Ontology : EGO-EBIprotein binding  plasma membrane  regulation of Notch signaling pathway  cell surface  integral component of membrane  enzyme binding  protein maturation  extracellular exosome  establishment of protein localization to plasma membrane  tetraspanin-enriched microdomain  
NDEx NetworkTSPAN15
Atlas of Cancer Signalling NetworkTSPAN15
Wikipedia pathwaysTSPAN15
Orthology - Evolution
OrthoDB23555
GeneTree (enSembl)ENSG00000099282
Phylogenetic Trees/Animal Genes : TreeFamTSPAN15
HOVERGENO95858
HOGENOMO95858
Homologs : HomoloGeneTSPAN15
Homology/Alignments : Family Browser (UCSC)TSPAN15
Gene fusions - Rearrangements
Fusion: TCGATSPAN15 VPS26A
Fusion: TCGATSPAN15 SAMD8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN15
dbVarTSPAN15
ClinVarTSPAN15
1000_GenomesTSPAN15 
Exome Variant ServerTSPAN15
ExAC (Exome Aggregation Consortium)TSPAN15 (select the gene name)
Genetic variants : HAPMAP23555
Genomic Variants (DGV)TSPAN15 [DGVbeta]
DECIPHER (Syndromes)10:71211226-71267423  ENSG00000099282
CONAN: Copy Number AnalysisTSPAN15 
Mutations
ICGC Data PortalTSPAN15 
TCGA Data PortalTSPAN15 
Broad Tumor PortalTSPAN15
OASIS PortalTSPAN15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN15
DgiDB (Drug Gene Interaction Database)TSPAN15
DoCM (Curated mutations)TSPAN15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN15 (select a term)
intoGenTSPAN15
Cancer3DTSPAN15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613140   
Orphanet
MedgenTSPAN15
Genetic Testing Registry TSPAN15
NextProtO95858 [Medical]
TSGene23555
GENETestsTSPAN15
Huge Navigator TSPAN15 [HugePedia]
snp3D : Map Gene to Disease23555
BioCentury BCIQTSPAN15
ClinGenTSPAN15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23555
Chemical/Pharm GKB GenePA128394634
Clinical trialTSPAN15
Miscellaneous
canSAR (ICR)TSPAN15 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN15
EVEXTSPAN15
GoPubMedTSPAN15
iHOPTSPAN15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:57 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.