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TSPAN15 (tetraspanin 15)

Identity

Alias (NCBI)2700063A19Rik
NET-7
NET7
TM4SF15
HGNC (Hugo) TSPAN15
HGNC Alias symbNET-7
HGNC Previous nameTM4SF15
HGNC Previous nametransmembrane 4 superfamily member 15
LocusID (NCBI) 23555
Atlas_Id 57780
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 69451465 and ends at 69507666 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD276 (15q24.1) / TSPAN15 (10q22.1)SLC39A14 (8p21.3) / TSPAN15 (10q22.1)TSPAN15 (10q22.1) / SAMD8 (10q22.2)
TSPAN15 (10q22.1) / VPS26A (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN15   23298
Cards
Entrez_Gene (NCBI)TSPAN15    tetraspanin 15
Aliases2700063A19Rik; NET-7; NET7; TM4SF15
GeneCards (Weizmann)TSPAN15
Ensembl hg19 (Hinxton)ENSG00000099282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099282 [Gene_View]  ENSG00000099282 [Sequence]  chr10:69451465-69507666 [Contig_View]  TSPAN15 [Vega]
ICGC DataPortalENSG00000099282
TCGA cBioPortalTSPAN15
AceView (NCBI)TSPAN15
Genatlas (Paris)TSPAN15
SOURCE (Princeton)TSPAN15
Genetics Home Reference (NIH)TSPAN15
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN15  -     chr10:69451465-69507666 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN15  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN15 - 10q22.1 [CytoView hg19]  TSPAN15 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000099282
Genome Data Viewer NCBITSPAN15 [Mapview hg19]  
OMIM613140   
Gene and transcription
Genbank (Entrez)AF120266 AI612860 AJ710178 BC003157 BC004161
RefSeq transcript (Entrez)NM_001351263 NM_012339
Consensus coding sequences : CCDS (NCBI)TSPAN15
Gene ExpressionTSPAN15 [ NCBI-GEO ]   TSPAN15 [ EBI - ARRAY_EXPRESS ]   TSPAN15 [ SEEK ]   TSPAN15 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN15 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23555
GTEX Portal (Tissue expression)TSPAN15
Human Protein AtlasENSG00000099282-TSPAN15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95858   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95858  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95858
PhosPhoSitePlusO95858
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN15
SuperfamilyO95858
AlphaFold pdb e-kbO95858   
Human Protein Atlas [tissue]ENSG00000099282-TSPAN15 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O95858
IntAct (EBI)O95858
BioGRIDTSPAN15
STRING (EMBL)TSPAN15
ZODIACTSPAN15
Ontologies - Pathways
QuickGOO95858
Ontology : AmiGOprotein binding  endoplasmic reticulum lumen  cytosol  plasma membrane  plasma membrane  integral component of plasma membrane  regulation of Notch signaling pathway  cell surface  nuclear body  enzyme binding  cell junction  late endosome membrane  intracellular membrane-bounded organelle  negative regulation of Notch signaling pathway  protein maturation  protein maturation  protein localization to plasma membrane  protein localization to plasma membrane  tetraspanin-enriched microdomain  amyloid fibril formation  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum lumen  cytosol  plasma membrane  plasma membrane  integral component of plasma membrane  regulation of Notch signaling pathway  cell surface  nuclear body  enzyme binding  cell junction  late endosome membrane  intracellular membrane-bounded organelle  negative regulation of Notch signaling pathway  protein maturation  protein maturation  protein localization to plasma membrane  protein localization to plasma membrane  tetraspanin-enriched microdomain  amyloid fibril formation  
NDEx NetworkTSPAN15
Atlas of Cancer Signalling NetworkTSPAN15
Wikipedia pathwaysTSPAN15
Orthology - Evolution
OrthoDB23555
GeneTree (enSembl)ENSG00000099282
Phylogenetic Trees/Animal Genes : TreeFamTSPAN15
Homologs : HomoloGeneTSPAN15
Homology/Alignments : Family Browser (UCSC)TSPAN15
Gene fusions - Rearrangements
Fusion : QuiverTSPAN15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN15
dbVarTSPAN15
ClinVarTSPAN15
MonarchTSPAN15
1000_GenomesTSPAN15 
Exome Variant ServerTSPAN15
GNOMAD BrowserENSG00000099282
Varsome BrowserTSPAN15
ACMGTSPAN15 variants
VarityO95858
Genomic Variants (DGV)TSPAN15 [DGVbeta]
DECIPHERTSPAN15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN15 
Mutations
ICGC Data PortalTSPAN15 
TCGA Data PortalTSPAN15 
Broad Tumor PortalTSPAN15
OASIS PortalTSPAN15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN15
Mutations and Diseases : HGMDTSPAN15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN15
DgiDB (Drug Gene Interaction Database)TSPAN15
DoCM (Curated mutations)TSPAN15
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN15
Cancer3DTSPAN15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613140   
Orphanet
DisGeNETTSPAN15
MedgenTSPAN15
Genetic Testing Registry TSPAN15
NextProtO95858 [Medical]
GENETestsTSPAN15
Target ValidationTSPAN15
Huge Navigator TSPAN15 [HugePedia]
ClinGenTSPAN15
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN15
Protein Interactions : CTDTSPAN15
Pharm GKB GenePA128394634
PharosO95858
Clinical trialTSPAN15
Miscellaneous
canSAR (ICR)TSPAN15
HarmonizomeTSPAN15
DataMed IndexTSPAN15
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:39 CEST 2021

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